On the chemistry of hydrides of N atoms and O+^+ ions

Previous work by various authors has suggested that the detection by Herschel/HIFI of nitrogen hydrides along the low density lines of sight towards G10.6-0.4 (W31C) cannot be accounted for by gas-phase chemical models. In this paper we investigate the role of surface reactions on dust grains in diffuse regions, and we find that formation of the hydrides by surface reactions on dust grains with efficiency comparable to that for H$_2$ formation reconciles models with observations of nitrogen hydrides. However, similar surface reactions do not contribute significantly to the hydrides of O$^+$ ions detected by Herschel/HIFI present along many sight lines in the Galaxy. The O$^+$ hydrides can be accounted for by conventional gas-phase chemistry either in diffuse clouds of very low density with normal cosmic ray fluxes or in somewhat denser diffuse clouds with high cosmic ray fluxes. Hydride chemistry in dense dark clouds appears to be dominated by gas-phase ion-molecule reactions.Comment: 19 pages, 4 figures, 4 tables Accepted for publication in Ap

Laboratory experiments on cohesive soil bed fluidization by water waves

Part I. Relationships between the rate of bed fluidization and the rate of wave energy dissipation, by Jingzhi Feng and Ashish J. Mehta and Part II. In-situ rheometry for determining the dynamic response of bed, by David J.A. Williams and P. Rhodri Williams. A series of preliminary laboratory flume experiments were carried out to examine the time-dependent behavior of a cohesive soil bed subjected to progressive, monochromatic waves. The bed was an aqueous, 50/50 (by weight) mixture of a kaolinite and an attapulgite placed in a plexiglass trench. The nominal bed thickness was 16 cm with density ranging from 1170 to 1380 kg/m 3, and water above was 16 to 20 cm deep. Waves of design height ranging from 2 to 8 cm and a nominal frequency of 1 Hz were run for durations up to 2970 min. Part I of this report describes experiments meant to examine the rate at which the bed became fluidized, and its relation to the rate of wave energy dissipation. Part II gives results on in-situ rheometry used to track the associated changes in bed rigidity. Temporal and spatial changes of the effective stress were measured during the course of wave action, and from these changes the bed fluidization rate was calculated. A wave-mud interaction model developed in a companion study was employed to calculate the rate of wave energy dissipation. The dependence of the rate of fluidization on the rate of energy dissipation was then explored. Fluidization, which seemingly proceeded down from the bed surface, occurred as a result of the loss of structural integrity of the soil matrix through a buildup of the excess pore pressure and the associated loss of effective stress. The rate of fluidization was typically greater at the beginning of wave action and apparently approached zero with time. This trend coincided with the approach of the rate of energy dissipation to a constant value. In general it was also observed that, for a given wave frequency, the larger the wave height the faster the rate of fluidization and thicker the fluid mud layer formed. On the other hand, increasing the time of bed consolidation prior to wave action decreased the fluidization rate due to greater bed rigidity. Upon cessation of wave action structural recovery followed. Dynamic rigidity was measured by specially designed, in situ shearometers placed in the bed at appropriate elevations to determine the time-dependence of the storage and loss moduli, G' and G", of the viscoelastic clay mixture under 1 Hz waves. As the inter-particle bonds of the space-filling, bed material matrix weakened, the shear propagation velocity decreased measurably. Consequently, G' decreased and G" increased as a transition from dynamically more elastic to more viscous response occurred. These preliminary experiments have demonstrated the validity of the particular rheometric technique used, and the critical need for synchronous, in-situ measurements of pore pressures and moduli characterizing bed rheology in studies on mud fluidization. This study was supported by WES contract DACW39-90-K-0010. (This document contains 151 pages.

A study of methanol and silicon monoxide production through episodic explosions of grain mantles in the Central Molecular Zone

Methanol (CH$_3$OH) is found to be abundant and widespread towards the Central Molecular Zone, the inner few hundred parsecs of our Galaxy. Its origin is, however, not fully understood. It was proposed that the high cosmic ray ionisation rate in this region could lead to a more efficient non-thermal desorption of this species formed on grain surfaces, but it would also mean that this species is destroyed in a relatively short timescale. In a first step, we run chemical models with a high cosmic ray ionisation rate and find that this scenario can only reproduce the lowest abundances of methanol derived in this region ($\sim$10$^{-9}$-10$^{-8}$). In a second step, we investigate another scenario based on episodic explosions of grain mantles. We find a good agreement between the predicted abundances of methanol and the observations. We find that the dominant route for the formation of methanol is through hydrogenation of CO on the grains followed by the desorption due to the grain mantle explosion. The cyclic aspect of this model can explain the widespread presence of methanol without requiring any additional mechanism. We also model silicon monoxide (SiO), another species detected in several molecular clouds of the Galactic Centre. An agreement is found with observations for a high depletion of Si (Si/H $\sim$ 10$^{-8}$) with respect to the solar abundance.Comment: Accepted in MNRA

Coulomb Oscillations of Indium-doped ZnO Nanowire Transistors in a Magnetic Field

We report on the observation of Coulomb oscillations from localized quantum dots superimposed on the normal hopping current in ZnO nanowire transistors. The Coulomb oscillations can be resolved up to 20 K. Positive anisotropic magnetoresistance has been observed due to the Lorentz force on the carrier motion. Magnetic field-induced tunneling barrier transparency results in an increase of oscillation amplitude with increasing magnetic field. The energy shift as a function of magnetic field indicates electron wavefunction modification in the quantum dots.Comment: 16 pages, 6 figure

Development of a SimpleProbe real-Time PCR Assay for rapid detection and identification of the US novel urethrotropic clade of Neisseria meningitidis ST-11 (US_NmUC)

Urethritis, or inflammation of the urethra, is one of the most common reasons men seek clinical care. Sexually transmitted pathogens including Neisseria gonorrhoeae are responsible for over half of the symptomatic urethritis cases in U.S. men. Recently, clinics in Indianapolis, Columbus, Atlanta, and other U.S. cities began to note increasing numbers of men presenting with urethritis and Gram-negative intracellular diplococci in their urethral smears who test negative for N. gonorrhoeae. Many of these discordant cases, which have periodically reached highs of more than 25% of presumed gonococcal cases in some sexually transmitted infection clinics in the U.S. Midwest, are infected with strains in a novel urethrotropic clade of Neisseria meningitidis ST-11 (US_NmUC). However, no cultivation-independent tests are available for the US_NmUC strains, and prior studies relied on microbial culture and genome sequencing to identify them. Here, we describe a PCR test that can identify the US_NmUC strains and distinguish them from commensal and invasive N. meningitidis strains as well as N. gonorrhoeae. Our SimpleProbe®-based real-time PCR assay targets a conserved nucleotide substitution in a horizontally acquired region of US_NmUC strain genomes. We applied the assay to 241 urine specimens whose microbial compositions had previously been determined by deep shotgun metagenomic sequencing. The assay detected the single US_NmUC positive case in this cohort, with no false positives. Overall, our simple and readily adaptable assay could facilitate investigation of the pathogenesis and epidemiology of the US_NmUC clade

The Spectral Correlation Function -- A New Tool for Analyzing Spectral-Line Maps

The "spectral correlation function" analysis we introduce in this paper is a new tool for analyzing spectral-line data cubes. Our initial tests, carried out on a suite of observed and simulated data cubes, indicate that the spectral correlation function [SCF] is likely to be a more discriminating statistic than other statistical methods normally applied. The SCF is a measure of similarity between neighboring spectra in the data cube. When the SCF is used to compare a data cube consisting of spectral-line observations of the ISM with a data cube derived from MHD simulations of molecular clouds, it can find differences that are not found by other analyses. The initial results presented here suggest that the inclusion of self-gravity in numerical simulations is critical for reproducing the correlation behavior of spectra in star-forming molecular clouds.Comment: 29 pages, including 4 figures (tar file submitted as source) See also: http://cfa-www.harvard.edu/~agoodman/scf/velocity_methods.htm

Feedback control of optical beam spatial profiles using thermal lensing

A method for active control of the spatial profile of a laser beam using adaptive thermal lensing is described. A segmented electrical heater was used to generate thermal gradients across a transmissive optical element, resulting in a controllable thermal lens. The segmented heater also allows the generation of cylindrical lenses, and provides the capability to steer the beam in both horizontal and vertical planes. Using this device as an actuator, a feedback control loop was developed to stabilize the beam size and position.Comment: 7 Pages, 7 figure