Cluster M Mycobacteriophages Bongo, PegLeg, and Rey with Unusually Large Repertoires of tRNA Isotopes

Genomic analysis of a large set of phages infecting the common hostMycobacterium smegmatis mc2155 shows that they span considerable genetic diversity. There are more than 20 distinct types that lack nucleotide similarity with each other, and there is considerable diversity within most of the groups. Three newly isolated temperate mycobacteriophages, Bongo, PegLeg, and Rey, constitute a new group (cluster M), with the closely related phages Bongo and PegLeg forming subcluster M1 and the more distantly related Rey forming subcluster M2. The cluster M mycobacteriophages have siphoviral morphologies with unusually long tails, are homoimmune, and have larger than average genomes (80.2 to 83.7 kbp). They exhibit a variety of features not previously described in other mycobacteriophages, including noncanonical genome architectures and several unusual sets of conserved repeated sequences suggesting novel regulatory systems for both transcription and translation. In addition to containing transfer-messenger RNA and RtcB-like RNA ligase genes, their genomes encode 21 to 24 tRNA genes encompassing complete or nearly complete sets of isotypes. We predict that these tRNAs are used in late lytic growth, likely compensating for the degradation or inadequacy of host tRNAs. They may represent a complete set of tRNAs necessary for late lytic growth, especially when taken together with the apparent lack of codons in the same late genes that correspond to tRNAs that the genomes of the phages do not obviously encode

Allelic Exclusion and Peripheral Reconstitution by TCR Transgenic T Cells Arising From Transduced Human Hematopoietic Stem/Progenitor Cells

Transduction and transplantation of human hematopoietic stem/progenitor cells (HSPC) with the genes for a T-cell receptor (TCR) that recognizes a tumor-associated antigen may lead to sustained long-term production of T cells expressing the TCR and confer specific antitumor activity. We evaluated this using a lentiviral vector (CCLc-MND-F5) carrying cDNA for a human TCR specific for an HLA-A*0201-restricted peptide of Melanoma Antigen Recognized by T cells (MART-1). CD34+ HSPC were transduced with the F5 TCR lentiviral vector or mock transduced and transplanted into neonatal NSG mice or NSG mice transgenic for human HLA-A*0201 (NSG-A2). Human CD8+ and CD4+ T cells expressing the human F5 TCR were present in the thymus, spleen, and peripheral blood after 4–5 months. Expression of human HLA-A*0201 in NSG-A2 recipient mice led to significantly increased numbers of human CD8+ and CD4+ T cells expressing the F5 TCR, compared with control NSG recipients. Transduction of the human CD34+ HSPC by the F5 TCR transgene caused a high degree of allelic exclusion, potently suppressing rearrangement of endogenous human TCR-β genes during thymopoiesis. In summary, we demonstrated the feasibility of engineering human HSPC to express a tumor-specific TCR to serve as a long-term source of tumor-targeted mature T cells for immunotherapy of melanoma

Method and system for reduction of irrigation runoff

An irrigation mitigation runoff system that includes an irrigation system having at least one water outlet and a sensor that detects flow of water through a boundary. A controller is operatively coupled to the irrigation system and the sensor. Responsive to the sensor detecting flow of water through the boundary above a pre-defined threshold, the controller signals the irrigation system to pause irrigation.U

Method and system for reduction of irrigation runoff

An irrigation mitigation runoff system that includes an irrigation system having at least one water outlet and a sensor that detects flow of water through a boundary. A controller is operatively coupled to the irrigation system and the sensor. Responsive to the sensor detecting flow of water through the boundary above a pre-defined threshold, the controller signals the irrigation system to pause irrigation.U

Method and system for reduction of irrigation runoff

An irrigation mitigation runoff system that includes an irrigation system having at least one water outlet and a sensor that detects flow of water through a boundary. A controller is operatively coupled to the irrigation system and the sensor. Responsive to the sensor detecting flow of water through the boundary above a pre-defined threshold, the controller signals the irrigation system to pause irrigation.U

Method and system for reduction of irrigation runoff

An irrigation mitigation runoff system that includes an irrigation system having at least one water outlet and a sensor that detects flow of water through a boundary. A controller is operatively coupled to the irrigation system and the sensor. Responsive to the sensor detecting flow of water through the boundary above a pre-defined threshold, the controller signals the irrigation system to pause irrigation.U