Optical THz generation, detection, and control on a chip

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Chemistry, June 2012.Cataloged from student-submitted PDF version of thesis.Includes bibliographical references.The THz polaritonics system is an on-chip platform for THz generation, detection, and control. THz-frequency electromagnetic waves are generated directly in a thin slab of lithium niobate crystal where they can be amplified and guided. Time-resolved phase-sensitive imaging lets us capture movies of THz waves as they propagate at the light-like speeds. I developed polaritonics methodologies and used the platform to study various microstructures interacting with THz waves. I began technique development by deriving a quantitative model explaining THz wave propagation in an anisotropic slab waveguide. From this model, I extracted the frequency-dependent wave velocity and used this knowledge to design an optical pumping geometry that phase-matches and coherently amplifies a selected THz frequency. This geometry can generate high-amplitude THz waves with a tunable center frequency and bandwidth. Much like the generation, the detection was also revamped. New optical designs, acquisition procedures, and hardware let us quantitatively measure THz field strengths. The image resolution was improved from ~50 [mu]m to 1.5 [mu]m, and measurement noise was reduced by 50-fold. Using the improved generation and detection methods, we studied two classes of microstructures: laser-machined air gaps and deposited metal antennas. Air gaps cut into the lithium niobate slab effectively reflect, waveguide, and scatter THz waves. We fabricated structures that demonstrate wave phenomena such as diffraction and interference and captured movies of THz waves interacting with these structures. The movies can be useful tools in lectures on electromagnetism because they beautifully illustrate the fundamental effects and bring cutting-edge research into the classroom. In addition to air structures, we studied metal antennas, which are interesting because of their ability to enhance optical fields and localize electromagnetic waves well below the diffraction limit. The polaritonics platform enabled incisive study of fundamental antenna behavior and scaling because we could map the antenna's near-field with [lambda]/100 spatial resolution and we could quantify large THz electric field amplitudes and enhancements in a deeply sub-wavelength gap between antennas. Antenna field enhancement is already facilitating nonlinear THz research, and the polaritonics platform will enable improved study of photonic systems such as metamaterials and photonic crystals.by Christopher A. Werley.Ph.D

Direct experimental visualization of waves and band structure in 2D photonic crystal slabs

We demonstrate for the first time the ability to perform time resolved imaging of terahertz (THz) waves propagating within a photonic crystal (PhC) slab. For photonic lattices with different orientations and symmetries, we used the electro-optic effect to record the full spatiotemporal evolution of THz fields across a broad spectral range spanning the photonic band gap. In addition to revealing real-space behavior, the data let us directly map the band diagrams of the PhCs. The data, which are in good agreement with theoretical calculations, display a rich set of effects including photonic band gaps, eigenmodes and leaky modes.National Science Foundation (U.S.) (Grant no. 1128632)National Science Foundation (U.S.) (NSF GRFP Fellowship)Canadian Institutes of Health Research (Fellowship

The homogenization limit and waveguide gradient index devices demonstrated through direct visualization of THz fields

Electromagnetic homogenization approximation calculates an effective refractive index of a composite material as a weighted average of its components, and has found uses in gradient refractive index and transformation optics devices. However, the utility of the homogenization approximation is hindered by uncertainty in its range of applicability. Harnessing the capability of time-resolved imaging provided by the terahertz polaritonics platform, we determined the dispersion curves of slab waveguides with periodic arrays of holes, and we quantified the breakdown of the homogenization approximation as the period approached the terahertz wavelength and the structure approached the photonic bandgap regime. We found that if the propagation wavelength in the dielectric waveguide was at least two times as large as the Bragg condition wavelength, the homogenization approximation held independent of the detailed geometry, propagation direction, or fill fraction. This value is much less demanding than the estimate of 10:1 often assumed for homogenization. We further used the experimental capabilities to extract the effective refractive index of the photonic crystals in the homogenization approximation limit, and we used this to analyze the predictive strength of analytical formulas. These formulas enabled rapid design of a Luneburg lens and a bi-directional cloak in a waveguide platform without the need for numerical simulations. Movies of terahertz waves interacting with these structures, which were fabricated using femtosecond laser machining, reveal excellent performance. The combination of an analytical formula and confidence in the homogenization approximation will aid in fast design and prototyping of gradient index devices.National Science Foundation (U.S.) (Grant 1128632)HDTRA Grant (1-12-1-0008)National Science Foundation (U.S.). Graduate Research Fellowship Progra

Screening Fluorescent Voltage Indicators with Spontaneously Spiking HEK Cells

Development of improved fluorescent voltage indicators is a key challenge in neuroscience, but progress has been hampered by the low throughput of patch-clamp characterization. We introduce a line of non-fluorescent HEK cells that stably express NaV 1.3 and KIR 2.1 and generate spontaneous electrical action potentials. These cells enable rapid, electrode-free screening of speed and sensitivity of voltage sensitive dyes or fluorescent proteins on a standard fluorescence microscope. We screened a small library of mutants of archaerhodopsin 3 (Arch) in spiking HEK cells and identified two mutants with greater voltage-sensitivity than found in previously published Arch voltage indicators

Photostick: a method for selective isolation of target cells from culture

Sorting of target cells from a heterogeneous pool is technically difficult when the selection criterion is complex, e.g. a dynamic response, a morphological feature, or a combination of multiple parameters. At present, mammalian cell selections are typically performed either via static fluorescence (e.g. fluorescence activated cell sorter), via survival (e.g. antibiotic resistance), or via serial operations (flow cytometry, laser capture microdissection). Here we present a simple protocol for selecting cells based on any static or dynamic property that can be identified by video microscopy and image processing. The “photostick” technique uses a cell-impermeant photochemical crosslinker and digital micromirror array-based patterned illumination to immobilize selected cells on the culture dish. Other cells are washed away with mild protease treatment. The crosslinker also labels the selected cells with a fluorescent dye and a biotin for later identification. The photostick protocol preserves cell viability, permits genetic profiling of selected cells, and can be performed with complex functional selection criteria such as neuronal firing patterns.Chemistry and Chemical Biolog

Bright and Fast Multicoloured Voltage Reporters via Electrochromic FRET

Genetically encoded fluorescent reporters of membrane potential promise to reveal aspects of neural function not detectable by other means. We present a palette of multicoloured brightly fluorescent genetically encoded voltage indicators with sensitivities from 8–13% ΔF/F per 100 mV, and half-maximal response times from 4–7 ms. A fluorescent protein is fused to an archaerhodopsin-derived voltage sensor. Voltage-induced shifts in the absorption spectrum of the rhodopsin lead to voltage-dependent nonradiative quenching of the appended fluorescent protein. Through a library screen, we identify linkers and fluorescent protein combinations that report neuronal action potentials in cultured rat hippocampal neurons with a single-trial signal-to-noise ratio from 7 to 9 in a 1 kHz imaging bandwidth at modest illumination intensity. The freedom to choose a voltage indicator from an array of colours facilitates multicolour voltage imaging, as well as combination with other optical reporters and optogenetic actuators.Chemistry and Chemical BiologyEngineering and Applied SciencesPhysic

All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins

All-optical electrophysiology—spatially resolved simultaneous optical perturbation and measurement of membrane voltage—would open new vistas in neuroscience research. We evolved two archaerhodopsin-based voltage indicators, QuasAr1 and QuasAr2, which show improved brightness and voltage sensitivity, have microsecond response times and produce no photocurrent. We engineered a channelrhodopsin actuator, CheRiff, which shows high light sensitivity and rapid kinetics and is spectrally orthogonal to the QuasArs. A coexpression vector, Optopatch, enabled cross-talk–free genetically targeted all-optical electrophysiology. In cultured rat neurons, we combined Optopatch with patterned optical excitation to probe back-propagating action potentials (APs) in dendritic spines, synaptic transmission, subcellular microsecond-timescale details of AP propagation, and simultaneous firing of many neurons in a network. Optopatch measurements revealed homeostatic tuning of intrinsic excitability in human stem cell–derived neurons. In rat brain slices, Optopatch induced and reported APs and subthreshold events with high signal-to-noise ratios. The Optopatch platform enables high-throughput, spatially resolved electrophysiology without the use of conventional electrodes

Optically Controlled Oscillators in an Engineered Bioelectric Tissue

Complex electrical dynamics in excitable tissues occur throughout biology, but the roles of individual ion channels can be difficult to determine due to the complex nonlinear interactions in native tissue. Here, we ask whether we can engineer a tissue capable of basic information storage and processing, where all functional components are known and well understood. We develop a cell line with four transgenic components: two to enable collective propagation of electrical waves and two to enable optical perturbation and optical readout of membrane potential. We pattern the cell growth to define simple cellular ring oscillators that run stably for > 2 h ( ~ 10[superscript 4]  cycles) and that can store data encoded in the direction of electrical circulation. Using patterned optogenetic stimulation, we probe the biophysical attributes of this synthetic excitable tissue in detail, including dispersion relations, curvature-dependent wave front propagation, electrotonic coupling, and boundary effects. We then apply the biophysical characterization to develop an optically reconfigurable bioelectric oscillator. These results demonstrate the feasibility of engineering bioelectric tissues capable of complex information processing with optical input and output.United States. Office of Naval Research (Grant N000141110-549)National Institutes of Health (U.S.) (Grant 1-R01-EB012498- 01 and New Innovator Grant1-DP2-OD007428)Howard Hughes Medical Institut