Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed

Genetic studies on telomere length are important for understanding age-related diseases. Prior GWAS for leukocyte TL have been limited to European and Asian populations. Here, we report the first sequencing-based association study for TL across ancestrally-diverse individuals (European, African, Asian and Hispanic/Latino) from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program. We used whole genome sequencing (WGS) of whole blood for variant genotype calling and the bioinformatic estimation of telomere length in n=109,122 individuals. We identified 59 sentinel variants (p-value OBFC1indicated the independent signals colocalized with cell-type specific eQTLs for OBFC1 (STN1). Using a multi-variant gene-based approach, we identified two genes newly implicated in telomere length, DCLRE1B (SNM1B) and PARN. In PheWAS, we demonstrated our TL polygenic trait scores (PTS) were associated with increased risk of cancer-related phenotypes

Crown Structure Metrics to Generalize Aboveground Biomass Estimation Model Using Airborne Laser Scanning Data in National Park of Hainan Tropical Rainforest, China

Forest aboveground biomass (AGB) is an important indicator for characterizing forest ecosystem structures and functions. Therefore, how to effectively investigate forest AGB is a vital mission. Airborne laser scanning (ALS) has been demonstrated as an effective way to support investigation and operational applications among a wide range of applications in the forest inventory. Moreover, three-dimensional structure information relating to AGB can be acquired by airborne laser scanning. Many studies estimated AGB from variables that were extracted from point cloud data, but few of them took full advantage of variables related to tree crowns to estimate the AGB. In this study, the main objective was to evaluate and compare the capabilities of different metrics derived from point clouds obtained from ALS. Particularly, individual tree-based alpha-shape, along with other traditional and commonly used plot-level height and intensity metrics, have been used from airborne laser scanning data. We took the random forest and multiple stepwise linear regression to estimate the AGB. By comparing AGB estimates with field measurements, our results showed that the best approach is mixed metrics, and the best estimation model is random forest (R2 = 0.713, RMSE = 21.064 t/ha, MAE = 15.445 t/ha), which indicates that alpha-shape may be a good alternative method to improve AGB estimation accuracy. This method provides an effective solution for estimating aboveground biomass from airborne laser scanning

Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed

Genetic studies on telomere length are important for understanding age-related diseases. Prior GWAS for leukocyte TL have been limited to European and Asian populations. Here, we report the first sequencing-based association study for TL across ancestrally-diverse individuals (European, African, Asian and Hispanic/Latino) from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program. We used whole genome sequencing (WGS) of whole blood for variant genotype calling and the bioinformatic estimation of telomere length in n=109,122 individuals. We identified 59 sentinel variants (p-value <5×10-9) in 36 loci associated with telomere length, including 20 newly associated loci (13 were replicated in external datasets). There was little evidence of effect size heterogeneity across populations. Fine-mapping at OBFC1 indicated the independent signals colocalized with cell-type specific eQTLs for OBFC1 (STN1). Using a multi-variant gene-based approach, we identified two genes newly implicated in telomere length, DCLRE1B (SNM1B) and PARN. In PheWAS, we demonstrated our TL polygenic trait scores (PTS) were associated with increased risk of cancer-related phenotypes