Wave propagation in one-dimensional nonlinear acoustic metamaterials

The propagation of waves in the nonlinear acoustic metamaterials (NAMs) is fundamentally different from that in the conventional linear ones. In this article we consider two one-dimensional NAM systems featuring respectively a diatomic and a tetratomic meta unit-cell. We investigate the attenuation of the wave, the band structure and the bifurcations to demonstrate novel nonlinear effects, which can significantly expand the bandwidth for elastic wave suppression and cause nonlinear wave phenomena. Harmonic averaging approach, continuation algorithm, Lyapunov exponents are combined to study the frequency responses, the nonlinear modes, bifurcations of periodic solutions and chaos. The nonlinear resonances are studied and the influence of damping on hyper-chaotic attractors is evaluated. Moreover, a "quantum" behavior is found between the low-energy and high-energy orbits. This work provides an important theoretical base for the further understandings and applications of NAMs

LISP based simulation generators for modeling complex space processes

The development of a simulation assistant for modeling discrete event processes is presented. Included are an overview of the system, a description of the simulation generators, and a sample process generated using the simulation assistant

Optimization of Recombination Methods and Expanding the Utility of Penicillin G Acylase

Protein engineering can be performed by combinatorial techniques (directed evolution) and data-driven methods using machine-learning algorithms. The main characteristic of directed evolution (DE) is the application of an effective and efficient screen or selection on a diverse mutant library. As it is important to have a diverse mutant library for the success of DE, we compared the performance of DNA-shuffling and recombination PCR on fluorescent proteins using sequence information as well as statistical methods. We found that the diversity of the libraries DNA-shuffling and recombination PCR generates were dependent on type of skew primers used and sensitive to nucleotide identity levels between genes. DNA-shuffling and recombination PCR produced libraries with different crossover tendencies, suggesting that the two protocols could be used in combination to produce better libraries. Data-driven protein engineering uses sequence, structure and function data along with analyzed empirical activity information to guide library design. Boolean Learning Support Vector Machines (BLSVM) to identify interacting residues in fluorescent proteins and the gene templates were modified to preserve interactions post recombination. By site-directed mutagenesis, recombination and expression experiments, we validated that BLSVM can be used to identify interacting residues and increase the fraction of active proteins in the library. As an extension to the above experiments, DE was applied on monomeric Red Fluorescent Proteins to improve its spectral characteristics and structure-guided protein engineering was performed on penicillin G acylase (PGA), an industrially relevant catalyst, to change its substrate specificity.Ph.D.Committee Chair: Bommarius, Andreas; Committee Member: Hu, Wei-Shou; Committee Member: Lee, Jay; Committee Member: Lutz, Stefan; Committee Member: Prausnitz, Mar

The Apparent Constant-Phase-Element Behavior of an Ideally Polarized Blocking Electrode

Two numerical methods were used to calculate the influence of geometry-induced current and potential distributions on the impedance response of an ideally polarized disk electrode. A coherent notation is proposed for local and global impedance which accounts for global, local, local interfacial, and both global and local ohmic impedances. The local and ohmic impedances are shown to provide insight into the frequency dispersion associated with the geometry of disk electrodes. The high-frequency global impedance response has the appearance of a constant-phase element CPE but can be considered to be only an apparent CPE because the CPE exponent is a function of frequency

The Nucleon Spin Polarizability at Order O(p4{\cal O}(p^4) in Chiral Perturbation Theory

We calculate the forward spin-dependent photon-nucleon Compton amplitude as a function of photon energy at the next-to-leading (${\cal O}(p^4)$) order in chiral perturbation theory, from which we extract the contribution to nucleon spin polarizability. The result shows a large correction to the leading order contribution.Comment: 7 pages, latex, 2 figures included as .eps file

The Apparent Constant-Phase-Element Behavior of a Disk Electrode with Faradaic Reactions

Geometry-induced current and potential distributions modify the global impedance response of a disk electrode subject to faradaic reactions. The problem was treated for both linear and Tafel kinetic regimes. The apparent capacity of a disk electrode embedded in an insulating plane was shown to vary considerably with frequency. At frequencies above the characteristic frequency for the faradaic reaction, the global impedance response has a quasi-constant-phase element (CPE) character, but with a CPE coefficient alpha that is a function of both dimensionless frequency K and dimensionless current density J. For small values of J, alpha approached unity, whereas, for larger values of J, alpha reached values near 0.78. The calculated values of alpha are typical of those obtained in impedance measurements on disk electrodes. For determining the interfacial capacitance, the influence of current and potential distributions on the impedance response cannot be neglected, even if the apparent CPE exponent alpha has values close to unity. Several methods taken from the literature were tested to determine their suitability for extracting interfacial capacitance values from impedance data on disk electrodes. The best results were obtained using a formula which accounted for both ohmic and charge-transfer resistances

Stability of elliptic solutions to the sinh-Gordon equation

Using the integrability of the sinh-Gordon equation, we demonstrate the spectral stability of its elliptic solutions. By constructing a Lyapunov functional using higher-order conserved quantities of the sinh-Gordon equation, we show that these elliptic solutions are orbitally stable with respect to subharmonic perturbations of arbitrary period

Automatic programming of simulation models

The objective of automatic programming is to improve the overall environment for describing the program. This improved environment is realized by a reduction in the amount of detail that the programmer needs to know and is exposed to. Furthermore, this improved environment is achieved by a specification language that is more natural to the user's problem domain and to the user's way of thinking and looking at the problem. The goal of this research is to apply the concepts of automatic programming (AP) to modeling discrete event simulation system. Specific emphasis is on the design and development of simulation tools to assist the modeler define or construct a model of the system and to then automatically write the corresponding simulation code in the target simulation language, GPSS/PC. A related goal is to evaluate the feasibility of various languages for constructing automatic programming simulation tools

Automatic programming of simulation models

The concepts of software engineering were used to improve the simulation modeling environment. Emphasis was placed on the application of an element of rapid prototyping, or automatic programming, to assist the modeler define the problem specification. Then, once the problem specification has been defined, an automatic code generator is used to write the simulation code. The following two domains were selected for evaluating the concepts of software engineering for discrete event simulation: manufacturing domain and a spacecraft countdown network sequence. The specific tasks were to: (1) define the software requirements for a graphical user interface to the Automatic Manufacturing Programming System (AMPS) system; (2) develop a graphical user interface for AMPS; and (3) compare the AMPS graphical interface with the AMPS interactive user interface

Local electrochemical impedance spectroscopy: A review and some recent developments

Local electrochemical impedance spectroscopy (LEIS), which provides a powerful tool for exploration of electrode heterogeneity, has its roots in the development of electrochemical techniques employing scanning of microelectrodes. The historical development of local impedance spectroscopy measurements is reviewed, and guidelines are presented for implementation of LEIS. The factors which control the limiting spatial resolution of the technique are identified. The mathematical foundation for the technique is reviewed, including definitions of interfacial and local Ohmic impedances on both local and global scales. Experimental results for the reduction of ferricyanide show the correspondence between local and global impedances. Simulations for a single Faradaic reaction on a disk electrode embedded in an insulator are used to show that the Ohmic contribution, traditionally considered to be a real value, can have complex character in certain frequency ranges