The EOS CERES Global Cloud Mask

To detect long-term climate trends, it is essential to produce long-term and consistent data sets from a variety of different satellite platforms. With current global cloud climatology data sets, such as the International Satellite Cloud Climatology Experiment (ISCCP) or CLAVR (Clouds from Advanced Very High Resolution Radiometer), one of the first processing steps is to determine whether an imager pixel is obstructed between the satellite and the surface, i.e., determine a cloud 'mask.' A cloud mask is essential to studies monitoring changes over ocean, land, or snow-covered surfaces. As part of the Earth Observing System (EOS) program, a series of platforms will be flown beginning in 1997 with the Tropical Rainfall Measurement Mission (TRMM) and subsequently the EOS-AM and EOS-PM platforms in following years. The cloud imager on TRMM is the Visible/Infrared Sensor (VIRS), while the Moderate Resolution Imaging Spectroradiometer (MODIS) is the imager on the EOS platforms. To be useful for long term studies, a cloud masking algorithm should produce consistent results between existing (AVHRR) data, and future VIRS and MODIS data. The present work outlines both existing and proposed approaches to detecting cloud using multispectral narrowband radiance data. Clouds generally are characterized by higher albedos and lower temperatures than the underlying surface. However, there are numerous conditions when this characterization is inappropriate, most notably over snow and ice of the cloud types, cirrus, stratocumulus and cumulus are the most difficult to detect. Other problems arise when analyzing data from sun-glint areas over oceans or lakes over deserts or over regions containing numerous fires and smoke. The cloud mask effort builds upon operational experience of several groups that will now be discussed

APASS Landolt-Sloan BVgri photometry of RAVE stars. I. Data, effective temperatures and reddenings

We provide APASS photometry in the Landolt BV and Sloan g'r'i' bands for all the 425,743 stars included in the latest 4th RAVE Data Release. The internal accuracy of the APASS photometry of RAVE stars, expressed as error of the mean of data obtained and separately calibrated over a median of 4 distinct observing epochs and distributed between 2009 and 2013, is 0.013, 0.012, 0.012, 0.014 and 0.021 mag for B, V, g', r' and i' band, respectively. The equally high external accuracy of APASS photometry has been verified on secondary Landolt and Sloan photometric standard stars not involved in the APASS calibration process, and on a large body of literature data on field and cluster stars, confirming the absence of offsets and trends. Compared with the Carlsberg Meridian Catalog (CMC-15), APASS astrometry of RAVE stars is accurate to a median value of 0.098 arcsec. Brightness distribution functions for the RAVE stars have been derived in all bands. APASS photometry of RAVE stars, augmented by 2MASS JHK infrared data, has been chi2 fitted to a densely populated synthetic photometric library designed to widely explore in temperature, surface gravity, metallicity and reddening. Resulting Teff and E(B-V), computed over a range of options, are provided and discussed, and will be kept updated in response to future APASS and RAVE data releases. In the process it is found that the reddening caused by an homogeneous slab of dust, extending for 140 pc on either side of the Galactic plane and responsible for E(B-V,poles)=0.036 +/- 0.002 at the galactic poles, is a suitable approximation of the actual reddening encountered at Galactic latitudes |b|>=25 deg.Comment: Astronomical Journal, in press. Resolution of Figures degrated to match arXiv file size limit

Genetic and biochemical analyses of chromosome and plasmid gene homologues encoding ICL and ArCP domains in Vibrioanguillarum strain 775

Anguibactin, the siderophore produced by Vibrio anguillarum 775 is synthesized from 2,3-dihydroxybenzoic acid (DHBA), cysteine and hydroxyhistamine via a nonribosomal peptide synthetase (NRPS) mechanism. Most of the genes encoding anguibactin biosynthetic proteins are harbored by the pJM1 plasmid. In this work we report the identification of a homologue of the plasmid-encoded angB on the chromosome of strain 775. The product of both genes harbor an isochorismate lyase (ICL) domain that converts isochorismic acid to 2,3-dihydro-2,3-dihydroxybenzoic acid, one of the steps of DHBA synthesis. We show in this work that both ICL domains are functional in the production of DHBA in V. anguillarum as well as in E. coli. Substitution by alanine of the aspartic acid residue in the active site of both ICL domains completely abolishes their isochorismate lyase activity in vivo. The two proteins also carry an aryl carrier protein (ArCP) domain. In contrast with the ICL domains only the plasmid encoded ArCP can participate in anguibactin production as determined by complementation analyses and site-directed mutagenesis in the active site of the plasmid encoded protein, S248A. The site-directed mutants, D37A in the ICL domain and S248A in the ArCP domain of the plasmid encoded AngB were also tested in vitro and clearly show the importance of each residue for the domain function and that each domain operates independently.

Defining the stock structure of northern Australia's threadfin salmon species

The requirement for Queensland, Northern Territory and Western Australian jurisdictions to ensure sustainable harvest of fish resources relies on robust information on the resource status. In northern Australia management of inshore fisheries that target blue threadfin (Eleutheronema tetradactylum) and king threadfin (Polydactylus macrochir) is independent for each of these jurisdictions. However, the lack of information on the stock structure and biology of threadfins means that the appropriate spatial scale of management is not known and assessment of the resource status is not possible. Establishing the stock structure of blue and king threadfin would also immensely improve the relevance of future resource assessments for fishery management of threadfins across northern Australia. This highlighted the urgent need for stock structure information for this species

Gain Components in Autler-Townes Doublet from Quantum Interferences in Decay Channels

We consider non-degenerate pump-probe spectroscopy of V-systems under conditions such that interference among decay channels is important. We demonstrate how this interference can result in new gain features instead of the usual absorption features. We relate this gain to the existence of a new vacuum induced quasi-trapped-state. We further show how this also results in large refractive index with low absorption.Comment: Total 8 pages, 6 figures, submitted to Physical Review

Control of Cerebellar Long-Term Potentiation by P-Rex-Family Guanine-Nucleotide Exchange Factors and Phosphoinositide 3-Kinase

Long-term potentiation (LTP) at the parallel fibre-Purkinje cell synapse in the cerebellum is a recently described and poorly characterized form of synaptic plasticity. The induction mechanism for LTP at this synapse is considered reciprocal to "classical" LTP at hippocampal CA1 pyramidal neurons: kinases promote increased trafficking of AMPA receptors into the postsynaptic density in the hippocampus, whereas phosphatases decrease internalization of AMPA receptors in the cerebellum. In the hippocampus, LTP occurs in overlapping phases, with the transition from early to late phases requiring the consolidation of initial induction processes by structural re-arrangements at the synapse. Many signalling pathways have been implicated in this process, including PI3 kinases and Rho GTPases.We hypothesized that analogous phases are present in cerebellar LTP, and took as the starting point for investigation our recent discovery that P-Rex--a Rac guanine nucleotide exchange factor which is activated by PtdIns(3,4,5)P(3)--is highly expressed in mouse cerebellar Purkinje neurons and plays a role in motor coordination. We found that LTP evoked at parallel fibre synapses by 1 Hz stimulation or by NO donors was not sustained beyond 30 min when P-Rex was eliminated or Rac inhibited, suggesting that cerebellar LTP exhibits a late phase analogous to hippocampal LTP. In contrast, inhibition of PI3 kinase activity eliminated LTP at the induction stage.Our data suggest that a PI3K/P-Rex/Rac pathway is required for late phase LTP in the mouse cerebellum, and that other PI3K targets, which remain to be discovered, control LTP induction

Preparation of amino-substituted indenes and 1,4-dihydronaphthalenes using a one-pot multireaction approach: total synthesis of oxybenzo[c]phenanthridine alkaloids

Allylic trichloroacetimidates bearing a 2-vinyl or 2-allylaryl group have been designed as substrates for a one-pot, two-step multi-bond-forming process leading to the general preparation of aminoindenes and amino-substituted 1,4-dihydronaphthalenes. The synthetic utility of the privileged structures formed from this one-pot process was demonstrated with the total synthesis of four oxybenzo[c]phenanthridine alkaloids, oxychelerythrine, oxysanguinarine, oxynitidine, and oxyavicine. An intramolecular biaryl Heck coupling reaction, catalyzed using the Hermann–Beller palladacycle was used to effect the key step during the synthesis of the natural products

Competing Pathways in the Photochemistry of Ru(H)2(CO)(PPh3)3

The photochemistry of Ru(H)2(CO)(PPh3)3 (1) has been reinvestigated employing laser and conventional light sources in conjunction with NMR spectroscopy and IR spectroscopy. The sensitivity of NMR experiments was enhanced by use of p-H2-induced polarization (PHIP), and a series of unexpected reactions were observed. The photoinduced reductive elimination of H2 was demonstrated (a) via NMR spectroscopy by the observation of hyperpolarized 1 on pulsed laser photolysis in the presence of p-H2 and (b) via nanosecond time-resolved infrared (TRIR) spectroscopy studies of the transient [Ru(CO)(PPh3)3]. Elimination of H2 competes with photoinduced loss of PPh3, as demonstrated by formation of dihydrogen, triphenylarsine, and pyridine substitution products which are detected by NMR spectroscopy. The corresponding coordinatively unsaturated 16-electron intermediate [Ru(H)2(CO)(PPh3)2] exists in two isomeric forms according to TRIR spectroscopy that react with H2 and with pyridine on a nanosecond time scale. These two pathways, reductive elimination of H2 and PPh3 loss, are shown to occur with approximately equal quantum yields upon 355 nm irradiation. Low-temperature photolysis in the presence of H2 reveals the formation of the dihydrogen complex Ru(H)2(η2-H2)(CO)(PPh3)2, which is detected by NMR and IR spectroscopy. This complex reacts further within seconds at room temperature, and its behavior provides a rationale to explain the PHIP results. Furthermore, photolysis in the presence of AsPh3 and H2 generates Ru(H)2(AsPh3)(CO)(PPh3)2. Two isomers of Ru(H)2(CO)(PPh3)2(pyridine) are formed according to NMR spectroscopy on initial photolysis of 1 in the presence of pyridine under H2. Two further isomers are formed as minor products; the configuration of each isomer was identified by NMR spectroscopy. Laser pump-NMR probe spectroscopy was used to observe coherent oscillations in the magnetization of one of the isomers of the pyridine complex; the oscillation frequency corresponds to the difference in chemical shift between the hydride resonances. Pyridine substitution products were also detected by TRIR spectroscopy

The frequency in Japanese of genetic variants of 22 proteins III. Phosphoglucomutase-1, phosphoglucomutase-2, 6-phosphogluconate dehydrogenase, adenylate kinase, and adenosine deaminase

Five enzyme systems, PGM 1 , PGM 2 , ADA, 6-PGD and AK, were examined by electrophoresis in over 4000 samples from Hiroshima and Nagasaki for the frequencies of common and rare variants. In the PGM 1 , system, the PGM 2 1 allele and PGM 7 1 ; allele were found in polymorphic proportions. I n addition, five kinds of slow variants and three types of fast variants of PGM 1 were detected. The PGM 3 NGS 1 1 allele was found in five individuals from Nagasaki, but was not observed in samples from Hiroshima. There were no variants of PGM 2 . Three kinds of fast variants of 6-PGD were detected. NO variation in AK was observed. There were no rare variants of ADA. The 6-PGD c allele had a frequency of 0.084 in Hiroshima, and 0.093 in Nagasaki, and the ADA 2 allele frequencies of 0.025 in Hiroshima and 0.032 in Nagasaki.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/65524/1/j.1469-1809.1977.tb01912.x.pd

Neutrophils in cancer: neutral no more

Neutrophils are indispensable antagonists of microbial infection and facilitators of wound healing. In the cancer setting, a newfound appreciation for neutrophils has come into view. The traditionally held belief that neutrophils are inert bystanders is being challenged by the recent literature. Emerging evidence indicates that tumours manipulate neutrophils, sometimes early in their differentiation process, to create diverse phenotypic and functional polarization states able to alter tumour behaviour. In this Review, we discuss the involvement of neutrophils in cancer initiation and progression, and their potential as clinical biomarkers and therapeutic targets