Continuous Melting of a "Partially Pinned" Two-Dimensional Vortex Lattice in a Square Array of Pinning Centers

The structure and equilibrium properties of a two-dimensional system of superconducting vortices in a periodic pinning potential with square symmetry are studied numerically. For a range of the strength of the pinning potential, the low-temperature crystalline state exhibits only one of the two basic periodicities (in the $x$- and $y$-directions) of the pinning potential. This ``partially pinned'' solid undergoes a continuous melting transition to a weakly modulated liquid as the temperature is increased. A spin model, constructed using symmetry arguments, is shown to reproduce the critical behavior at this transition.Comment: 5 pages, 4 figure

Quantum computation with two-level trapped cold ions beyond Lamb-Dicke limit

We propose a simple scheme for implementing quantum logic gates with a string of two-level trapped cold ions outside the Lamb-Dicke limit. Two internal states of each ion are used as one computational qubit (CQ) and the collective vibration of ions acts as the information bus, i.e., bus qubit (BQ). Using the quantum dynamics for the laser-ion interaction as described by a generalized Jaynes-Cummings model, we show that quantum entanglement between any one CQ and the BQ can be coherently manipulated by applying classical laser beams. As a result, universal quantum gates, i.e. the one-qubit rotation and two-qubit controlled gates, can be implemented exactly. The required experimental parameters for the implementation, including the Lamb-Dicke (LD) parameter and the durations of the applied laser pulses, are derived. Neither the LD approximation for the laser-ion interaction nor the auxiliary atomic level is needed in the present scheme.Comment: 12 pages, no figures, to appear in Phys. Rev.

Commensurate and Incommensurate Vortex Lattice Melting in Periodic Pinning Arrays

We examine the melting of commensurate and incommensurate vortex lattices interacting with square pinning arrays through the use of numerical simulations. For weak pinning strength in the commensurate case we observe an order-order transition from a commensurate square vortex lattice to a triangular floating solid phase as a function of temperature. This floating solid phase melts into a liquid at still higher temperature. For strong pinning there is only a single transition from the square pinned lattice to the liquid state. For strong pinning in the incommensurate case, we observe a multi-stage melting in which the interstitial vortices become mobile first, followed by the melting of the entire lattice, consistent with recent imaging experiments. The initial motion of vortices in the incommensurate phase occurs by an exchange process of interstitial vortices with vortices located at the pinning sites. We have also examined the vortex melting behavior for higher matching fields and find that a coexistence of a commensurate pinned vortex lattice with an interstitial vortex liquid occurs while at higher temperatures the entire vortex lattice melts. For triangular arrays at incommensurate fields higher than the first matching field we observe that the initial vortex motion can occur through a novel correlated ring excitation where a number of vortices can rotate around a pinned vortex. We also discuss the relevance of our results to recent experiments of colloidal particles interacting with periodic trap arrays.Comment: 8 figure

Entanglement and Quantum Phase Transitions via Adiabatic Quantum Computation

For a finite XY chain and a finite two-dimensional Ising lattice, it is shown that the paramagnetic ground state is adiabatically transformed to the GHZ state in the ferromagnetic phase by slowly turning on the magnetic field. The fidelity between the GHZ state and an adiabatically evolved state shows a feature of the quantum phase transition.Comment: Revise

The multiple solutions of self-consistency condition in Walecka model and the validity of the Brown-Rho scaling law

We investigate the self-consistency condition (SCC) of mean-field theory in Walecka model and find that the solutions of the SCC are multiple at high temperature and chemical potential. Using the effective Lagrangian approach, we study medium effects on the $\omega$ meson mass by taking into account of vacuum effects. We show that the $\omega$ meson mass decreases with both temperature and chemical potential with a general tendency, while near the critical point several $\omega$ meson masses become degenerate due to the multiple solutions of the SCC. We check the validity of Brown-Rho scaling law in this case. Finally, we calculate the thermodynamic potential and prove that the multiple solutions of the SCC result from a first-order phase transition of nuclear matter in the Walecka model at high temperature and chemical potential.Comment: 10 pages in Revtex with 9 figure

Flavor Changing Neutral Currents involving Heavy Quarks with Four Generations

We study various FCNC involving heavy quarks in the Standard Model (SM) with a sequential fourth generation. After imposing $B\to X_s\gamma$, $B\to X_sl^+l^-$ and $Z\to b\bar{b}$ constraints, we find ${\cal B}(Z\to s\bar{b}+\bar{s}b)$ can be enhanced by an order of magnitude to $10^{-7}$, while $t\to cZ, cH$ decays can reach $10^{-6}$, which are orders of magnitude higher than in SM. However,these rates are still not observable for the near future.With the era of LHC approaching, we focus on FCNC decays involving fourth generation $b^\prime$ and $t^\prime$ quarks. We calculate the rates for loop induced FCNC decays $b^\prime\to bZ, bH, bg, b\gamma$, as well as t^\prime\to tZ,\tH, tg, t\gamma. If $|V_{cb'}|$ is of order $|V_{cb}| \simeq 0.04$, tree level $b^\prime\to cW$ decay would dominate, posing a challenge since $b$-tagging is less effective. For $|V_{cb'}| \ll |V_{cb}|$, $b'\to tW$ would tend to dominate, while $b'\to t^\prime W^*$ could also open for heavier $b'$, leading to thepossibility of quadruple-$W$ signals via $b'\bar b'\to b\bar b W^+W^-W^+W^-$. The FCNC $b'\to bZ, bH$ decays could still dominate if $m_{b'}$ is just above 200 GeV. For the case of $t'$, ingeneral $t^\prime\to bW$ would be dominant, hence it behaves like a heavy top. For both $b'$ and $t'$, except for the intriguing light $b'$ case, FCNC decays are in the $10^{-4} -10^{-2}$ range, and are quite detectable at the LHC.For a possible future ILC, we find the associated production of FCNC $e^+e^-\to b\bar s$, $t\bar c$ are below sensitivity, while $e^+e^-\to b^\prime\bar b$ and$t^\prime\bar t$ can be better probed.Tevatron Run-II can still probe the lighter $b'$ or $t'$ scenario. LHC would either discover the fourth generation and measure the FCNC rates, or rule out the fourth generation conclusively.Comment: 31 pages, 15 eps figures, version to appear in JHE

Thermodynamics of an Anyon System

We examine the thermal behavior of a relativistic anyon system, dynamically realized by coupling a charged massive spin-1 field to a Chern-Simons gauge field. We calculate the free energy (to the next leading order), from which all thermodynamic quantities can be determined. As examples, the dependence of particle density on the anyon statistics and the anyon anti-anyon interference in the ideal gas are exhibited. We also calculate two and three-point correlation functions, and uncover certain physical features of the system in thermal equilibrium.Comment: 18 pages; in latex; to be published in Phys. Rev.

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types

GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium

Decline in muscle strength with aging is an important predictor of health trajectory in the elderly. Several factors, including genetics, are proposed contributors to variability in muscle strength. To identify genetic contributors to muscle strength, a meta-analysis of genomewide association studies of handgrip was conducted. Grip strength was measured using a handheld dynamometer in 27 581 individuals of European descent over 65 years of age from 14 cohort studies. Genomewide association analysis was conducted on ~2.7 million imputed and genotyped variants (SNPs). Replication of the most significant findings was conducted using data from 6393 individuals from three cohorts. GWAS of lower body strength was also characterized in a subset of cohorts. Two genomewide significant (P-value< 5 × 10−8) and 39 suggestive (P-value< 5 × 10−5) associations were observed from meta-analysis of the discovery cohorts. After meta-analysis with replication cohorts, genomewide significant association was observed for rs752045 on chromosome 8 (β = 0.47, SE = 0.08, P-value = 5.20 × 10−10). This SNP is mapped to an intergenic region and is located within an accessible chromatin region (DNase hypersensitivity site) in skeletal muscle myotubes differentiated from the human skeletal muscle myoblasts cell line. This locus alters a binding motif of the CCAAT/enhancer-binding protein-β (CEBPB) that is implicated in muscle repair mechanisms. GWAS of lower body strength did not yield significant results. A common genetic variant in a chromosomal region that regulates myotube differentiation and muscle repair may contribute to variability in grip strength in the elderly. Further studies are needed to uncover the mechanisms that link this genetic variant with muscle strength