Oystershell Scale: An Invasive Threat to Aspen Conservation

Aspen decline is an acute and chronic problem in Arizona, where high levels of overstory mortality and a lack of recruitment continue to be observed. Oystershell scale (Lepidosaphes ulmi; OSS), an invasive sapsucking insect, has recently become widespread in native aspen stands in the southwestern U.S., further contributing to aspen mortality. Damage is severe in lower elevation stands and within ungulate exclosures created to conserve aspen. Young recruiting aspen that are rare on the landscape incur high levels of OSS-caused mortality when infested (Fig. 1). OSS has only recently become a pest of concern in the Southwest and Intermountain West, and thus, mitigation strategies are lacking for OSS in natural forest settings. OSS is also polyphagous and affects several woody hosts with thin bark, adding to management complexity. Collaborative efforts have been initiated to address OSS biology, natural predators, and management strategies

The impacts of increasing drought on forest dynamics, structure, and biodiversity in the United States

We synthesize insights from current understanding of drought impacts at stand‐to‐biogeographic scales, including management options, and we identify challenges to be addressed with new research. Large stand‐level shifts underway in western forests already are showing the importance of interactions involving drought, insects, and fire. Diebacks, changes in composition and structure, and shifting range limits are widely observed. In the eastern US, the effects of increasing drought are becoming better understood at the level of individual trees, but this knowledge cannot yet be confidently translated to predictions of changing structure and diversity of forest stands. While eastern forests have not experienced the types of changes seen in western forests in recent decades, they too are vulnerable to drought and could experience significant changes with increased severity, frequency, or duration in drought. Throughout the continental United States, the combination of projected large climate‐induced shifts in suitable habitat from modeling studies and limited potential for the rapid migration of tree populations suggests that changing tree and forest biogeography could substantially lag habitat shifts already underway. Forest management practices can partially ameliorate drought impacts through reductions in stand density, selection of drought‐tolerant species and genotypes, artificial regeneration, and the development of multistructured stands. However, silvicultural treatments also could exacerbate drought impacts unless implemented with careful attention to site and stand characteristics. Gaps in our understanding should motivate new research on the effects of interactions involving climate and other species at the stand scale and how interactions and multiple responses are represented in models. This assessment indicates that, without a stronger empirical basis for drought impacts at the stand scale, more complex models may provide limited guidance.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/134257/1/gcb13160_am.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/134257/2/gcb13160.pd

The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma

We describe the landscape of somatic genomic alterations of 66 chromophobe renal cell carcinomas (ChRCCs) based on multidimensional and comprehensive characterization, including mitochondrial DNA (mtDNA) and whole genome sequencing. The result is consistent that ChRCC originates from the distal nephron compared to other kidney cancers with more proximal origins. Combined mtDNA and gene expression analysis implicates changes in mitochondrial function as a component of the disease biology, while suggesting alternative roles for mtDNA mutations in cancers relying on oxidative phosphorylation. Genomic rearrangements lead to recurrent structural breakpoints within TERT promoter region, which correlates with highly elevated TERT expression and manifestation of kataegis, representing a mechanism of TERT up-regulation in cancer distinct from previously-observed amplifications and point mutations

Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin

Recent genomic analyses of pathologically-defined tumor types identify “within-a-tissue” disease subtypes. However, the extent to which genomic signatures are shared across tissues is still unclear. We performed an integrative analysis using five genome-wide platforms and one proteomic platform on 3,527 specimens from 12 cancer types, revealing a unified classification into 11 major subtypes. Five subtypes were nearly identical to their tissue-of-origin counterparts, but several distinct cancer types were found to converge into common subtypes. Lung squamous, head & neck, and a subset of bladder cancers coalesced into one subtype typified by TP53 alterations, TP63 amplifications, and high expression of immune and proliferation pathway genes. Of note, bladder cancers split into three pan-cancer subtypes. The multi-platform classification, while correlated with tissue-of-origin, provides independent information for predicting clinical outcomes. All datasets are available for data-mining from a unified resource to support further biological discoveries and insights into novel therapeutic strategies

Building Ecosystem Resilience and Adaptive Capacity: A Systematic Review of Aspen Ecology and Management in the Southwest

Quaking aspen (Populus tremuloides Michx.) has high conservation value on the southwestern edge of its range, which extends from the southwestern United States (i.e., Arizona, New Mexico, and Texas) to central Mexico. This value is driven by aspen\u27s ecological importance, positive impact on local economies, and aesthetic and cultural values. Generally, the scant aspen populations that remain in the Southwest lack resilience and adaptive capacity, and managers are unsure how best to maintain the species in an uncertain future. This systematic review seeks to address that need by reviewing existing literature from the Southwest on which biotic and abiotic factors influence aspen forest dynamics and by synthesizing that literature with a discussion of how management can promote aspen ecosystem resilience and adaptive capacity. We found that fire and silvicultural treatments promote aspen regeneration, but chronic ungulate browse inhibits recruitment. Moreover, drought is a driver of overstory mortality and has a negative influence on recruitment. In the second half of this review, we propose three management objectives for increasing aspen resilience and adaptive capacity: (1) promote diversity in age structure, (2) mitigate ungulate impacts, and (3) enhance complexity. We consider how various management strategies could meet these objectives and highlight potential threats to aspen forest health and resilience

Water relations and drought response of Pinus strobiformis

Southwestern white pine (Pinus strobiformis Engelm.) faces dual threats of climate change shifting its environmental niche and mortality due to a nonnative, invasive fungal pathogen. To inform efforts to sustain this species, we established experimental field trials in three common gardens along an elevational gradient with drought treatments to assess trait responses in southwestern white pine. We measured predawn and midday water potential on 44 maternal families from 10 populations at each garden. We used regression between predawn and midday water potentials to estimate hydroscape area, an index of stomatal regulation of transpiration. We measured leaf carbon isotope ratio and estimated carbon isotope discrimination and leaf mass per area to understand the effects of gardens and treatments on stomatal aperture and leaf structure. Water stress caused by experimental drought and temperature decreased leaf carbon isotope discrimination and leaf mass per area, indicating formation of thin leaves with low stomatal conductance in response to heat and drought. The hydroscape area of southwestern white pine suggests tight control of transpiration via stomatal closure, similar to other isohydric pines. Families with greater stomatal closure (inferred from carbon isotope ratio) at the warm, dry garden had higher survival than other families, suggesting an important role of isohydry in acclimation of southwestern white pine to expected habitat drying and warming.The accepted manuscript in pdf format is listed with the files at the bottom of this page. The presentation of the authors' names and (or) special characters in the title of the manuscript may differ slightly between what is listed on this page and what is listed in the pdf file of the accepted manuscript; that in the pdf file of the accepted manuscript is what was submitted by the author