Monitoring of a Nearshore Small Dolphin Species Using Passive Acoustic Platforms and Supervised Machine Learning Techniques

Passive acoustic monitoring (PAM) is increasingly being adopted as a non-invasive method for the assessment of ocean ecological dynamics. PAM is an important sampling approach for acquiring critical information about marine mammals, especially in areas where data are lacking and where evaluations of threats for vulnerable populations are required. The Indo-Pacific humpback dolphin (IPHD, Sousa chinensis) is a coastal species which inhabits tropical and warm-temperate waters from the eastern Indian Ocean throughout Southeast Asia to central China. A new population of this species was recently discovered in waters southwest of Hainan Island, China. An array of passive acoustic platforms was deployed at depths of 10–20 m (the preferred habitat of humpback dolphins), across sites covering more than 100 km of coastline. In this study, we explored whether the acoustic data recorded by the array could be used to classify IPHD echolocation clicks, with the aim of investigating the spatiotemporal patterns of distribution and acoustic behavior of this species. A number of supervised machine learning algorithms were trained to automatically classify echolocation clicks from the different types of short-broadband pulses recorded. The best performance was reported by a cubic support vector machine (Cubic SVM), which was applied to 19,215 5-min recordings (∼4.2 TB), collected over a period of 75 days at six locations. Subsequently, using spectrogram visualization and audio listening, human operators confirmed the presence of clicks within the selected files. Additionally, other dolphin vocalizations (including whistles, buzzes, and burst pulses) and different sound sources (soniferous fishes, snapping shrimps, human activities) were also reported. The detection range of IPHD clicks was estimated using a transmission loss (TL) model and the performance of the trained classifier was compared with data synchronously collected by an acoustic data logger (A-tag). This study demonstrates that the distribution and habitat use of a coastal and resident dolphin species can be monitored over a large spatiotemporal scale, using an array of passive acoustic platforms and a data analysis protocol that includes both machine learning techniques and spectrogram inspection

Apomixis for no bacteria-induced thelytoky in Diglyphus wani (Hymenoptera: Eulophidae)

In Hymenoptera species, the reproductive mode is usually arrhenotoky, where haploid males arise from unfertilized eggs and diploid females from fertilized eggs. In addition, a few species reproduce by thelytoky, where diploid females arise from unfertilized eggs. Diploid females can be derived through various cytological mechanisms in thelytokous Hymenoptera species. Hitherto, these mechanisms were revealed mainly in endosymbiont-induced thelytokous Hymenoptera species. In contrast, thelytokous Hymenoptera species in which a reproductive manipulator has not been verified or several common endosymbionts have been excluded were paid less attention in their cytological mechanisms, for instance, Diglyphus wani (Hymenoptera: Eulophidae). Here, we investigated the cytological mechanism of D. wani using cytological methods and genetic markers. Our observations indicated that the diploid karyotypes of two strains of D. wani consist of four pairs of relatively large metacentric chromosomes and one pair of short submetacentric chromosomes (2n = 10). The arrhenotokous strains could complete normal meiosis, whereas the thelytokous strain lacked meiosis and did not expulse any polar bodies. This reproductive type of lacking meiosis is classified as apomictic thelytoky. Moreover, a total of 636 microsatellite sequences were obtained from thelytokous D. wani, dominated by dinucleotide repeats. Genetic markers results showed all three generations of offspring from thelytokous strain maintained the same genotype as their parents. Our results revealed that D. wani is the first eulophid parasitoid wasp in Hymenoptera whose thelytoky was not induced by bacteria to form an apomictic thelytoky. These findings provide a baseline for future inner molecular genetic studies of ameiotic thelytoky

Climate Change Increases the Expansion Risk of <i>Helicoverpa zea</i> in China According to Potential Geographical Distribution Estimation

Helicoverpa zea, a well-documented and endemic pest throughout most of the Americas, affecting more than 100 species of host plants. It is a quarantine pest according to the Asia and Pacific Plant Protection Commission (APPPC) and the catalog of quarantine pests for plants imported to the People’s Republic of China. Based on 1781 global distribution records of H. zea and eight bioclimatic variables, the potential geographical distributions (PGDs) of H. zea were predicted by using a calibrated MaxEnt model. The contribution rate of bioclimatic variables and the jackknife method were integrated to assess the significant variables governing the PGDs. The response curves of bioclimatic variables were quantitatively determined to predict the PGDs of H. zea under climate change. The results showed that: (1) four out of the eight variables contributed the most to the model performance, namely, mean diurnal range (bio2), precipitation seasonality (bio15), precipitation of the driest quarter (bio17) and precipitation of the warmest quarter (bio18); (2) PGDs of H. zea under the current climate covered 418.15 × 104 km2, and were large in China; and (3) future climate change will facilitate the expansion of PGDs for H. zea under shared socioeconomic pathways (SSP) 1-2.6, SSP2-4.5, and SSP5-8.5 in both the 2030s and 2050s. The conversion of unsuitable to low suitability habitat and moderately to high suitability habitat increased by 8.43% and 2.35%, respectively. From the present day to the 2030s, under SSP1-2.6, SSP2-4.5 and SSP5-8.5, the centroid of the suitable habitats of H. zea showed a general tendency to move eastward; from 2030s to the 2050s, under SSP1-2.6 and SSP5-8.5, it moved southward, and it moved slightly northward under SSP2-4.5. According to bioclimatic conditions, H. zea has a high capacity for colonization by introduced individuals in China. Customs ports should pay attention to host plants and containers of H. zea and should exchange information to strengthen plant quarantine and pest monitoring, thus enhancing target management

Constructing an Ensemble Model and Niche Comparison for the Management Planning of Eucalyptus Longhorned Borer <i>Phoracantha semipunctata</i> under Climate Change

Phoracantha semipunctata is a destructive invasive alien forest pest worldwide. It primarily damages the eucalyptus via adults, affecting almost all parts of the eucalyptus. Its larvae develop in almost all major tissues of the plant. Phoracantha semipunctata spreads both via the migration of adults and global trade in intercontinental translocation. Currently, this pest has spread to six continents worldwide, except Antarctica, resulting in substantial economic losses. Based on global occurrence data and environmental variables, the potential global geographical distribution of P. semipunctata was predicted using an ensemble model. The centroid shift, overlap, unfilling, and expansion scheme were selected to assess niche dynamics during the global invasion process. Our results indicated that the AUC and TSS values of the ensemble model were 0.993 and 0.917, respectively, indicating the high prediction accuracy of the model. The distribution pattern of P. semipunctata is primarily attributed to the temperature seasonality (bio4), mean temperature of the warmest quarter (bio10), and human influence index variables. The potential geographical distribution of P. semipunctata is primarily in western and southwestern Asia, western Europe, western and southern North America, southern South America, southern Africa, and eastern and southern Oceania. The potential geographical distribution of P. semipunctata showed a downward trend in the 2030s and the 2050s. The distribution centroid showed a general tendency to shift southward from the near-current to future climate. Phoracantha semipunctata has largely conserved its niche during the global invasion process. More attention should be paid to the early warning, prevention, and control of P. semipunctata in the countries and regions where it has not yet become invasive

Predicting Climate Change Effects on the Potential Distribution of Two Invasive Cryptic Species of the Bemisia tabaci Species Complex in China

Middle East-Asia Minor 1 (MEAM1) and Mediterranean (MED) are two invasive cryptic species of the Bemisia tabaci species complex (Hemiptera: Aleyrodidae) that cause serious damage to agricultural and horticultural crops worldwide. To explore the possible impact of climate change on their distribution, the maximum entropy (MaxEnt) model was used to predict the potential distribution ranges of MEAM1 and MED in China under current and four future climate scenarios, using shared socioeconomic pathways (SSPs), namely SSP1-2.6, SSP2-4.5, SSP3-7.0, and SSP5-8.5, over four time periods (2021&ndash;2040, 2041&ndash;2060, 2061&ndash;2080, and 2081&ndash;2100). The distribution ranges of MEAM1 and MED were extensive and similar in China under current climatic conditions, while their moderately and highly suitable habitat ranges differed. Under future climate scenarios, the areas of suitable habitat of different levels for MEAM1 and MED were predicted to increase to different degrees. However, the predicted expansion of suitable habitats varied between them, suggesting that these invasive cryptic species respond differently to climate change. Our results illustrate the difference in the effects of climate change on the geographical distribution of different cryptic species of B. tabaci and provide insightful information for further forecasting and managing the two invasive cryptic species in China

Characteristics of the Accessible Chromatin Landscape and Transcriptome under Different Temperature Stresses in <i>Bemisia tabaci</i>

Bemisia tabaci is an important invasive pest with worldwide distribution and strong temperature tolerance. Previous studies have shown that temperature tolerance varies significantly between the different invasive populations. Several key factors involved in epigenetic regulation have been identified and verified in B. tabaci; therefore, epigenetic adaptation mechanisms may also exist. This study aimed to detect changes in the chromatin accessibility landscape and genome-wide transcriptome under different temperature stresses in B. tabaci. Assay for transposase-accessible chromatin with high-throughput sequencing and RNA-seq analyses indicated that transcriptional activity of the genes strongly correlates with chromatin accessibility. Chromatin transcription-activated gene expression regulation is dominant during high-temperature stress in B. tabaci, mainly through the transcriptional repression of genes related to low-temperature stress resistance. Furthermore, B. tabaci resists low-temperature stress by regulating enzyme activities and withstands high-temperature stress by regulating metabolism and synthesis of organic substances, both achieved by altering chromatin accessibility. In summary, this study provides a theoretical basis for exploring changes in gene expression and chromatin accessibility under different temperature stresses, offering a new approach to unravelling regulatory mechanisms underlying the onset of molecular regulation in response to various temperature stress conditions

Multiple Data Demonstrate That Bacteria Regulating Reproduction Could Be Not the Cause for the Thelytoky of Diglyphus&nbsp;wani (Hymenoptera: Eulophidae)

In Hymenoptera parasitoids, the reproductive mode is arrhenotoky, while a few species reproduce by thelytoky. The thelytoky of Hymenoptera parasitoids is generally genetically determined by the parasitoids themselves or induced by bacteria, including Wolbachia, Cardinium, and Rickettsia. Diglyphus&nbsp;wani (Hymenoptera: Eulophidae), a recently reported thelytokous species is a main parasitoid attacking agromyzid leafminers. To assess whether endosymbionts induce thelytoky in D.&nbsp;wani, we performed universal PCR detection and sequenced the V3-V4 region of 16S ribosomal RNA gene. In addition, bacteria were removed through high-temperature and antibiotic treatments, and the localized bacteria were detected using FISH. Based on general PCR detection, Wolbachia, Cardinium, Rickettsia, Arsenophonus, Spiroplasma, and Microsporidia were absent in laboratory and field individuals of thelytokous D.&nbsp;wani. Furthermore, 16S rRNA gene sequencing revealed that the dominant endosymbionts in thelytokous D.&nbsp;wani were not reproductive manipulators. High-temperature and antibiotic treatment for five consecutive generations cannot reverse the thelytokous pattern of D.&nbsp;wani, and no male offspring were produced. Moreover, no bacterial spots were found in the ovaries of D.&nbsp;wani. Thus, it is considered that the thelytoky of D. wani does not result in the presence of endosymbionts. This species is thus the second reported eulophid parasitoid whose thelytoky appears not to be associated with endosymbionts

Predicting the Potential Suitable Area of the Invasive Ant <i>Linepithema humile</i> in China under Future Climatic Scenarios Based on Optimized MaxEnt

Linepithema humile (Mayr, 1868) (Hymenoptera: Formicidae) is one of “100 of the world’s worst invasive alien species” listed by the International Union for Conservation of Nature and Natural Resources (IUCN). Although native to South America, this ant has spread worldwide via international trade. Currently, L. humile has not been found in China, and if it invades China, it might pose a potential risk to the native invertebrates, vertebrates, plants, and human livelihoods. Based on 2432 global occurrence records and ten bioclimatic variables, the optimized MaxEnt model was used to predict the potential suitable areas of L. humile in China. We analyzed the important bioclimatic variables affecting the potential suitable areas, and determined the changes in potential suitable areas under future climatic scenarios. Our results indicated that the mean temperature of the coldest quarter (Bio11), precipitation of the coldest quarter (Bio19), mean temperature of the wettest quarter (Bio8), and precipitation of the warmest quarter (Bio18) were the most important bioclimatic variables. Under the current climatic scenarios, the potential suitable area of L. humile in China is 80.31 × 104 km2, which is mainly located in Fujian, Zhejiang, Hunan, Jiangxi, Guangxi, Yunnan, and Hubei. Under future climate scenarios over coming decades, the potential suitable areas of L. humile showed an overall increase and a shift to higher latitudes, which indicated the invasion risk of L. humile in China will increase under climate change. Our findings provide the theoretical guidance for the early warning and monitoring of L. humile in China

Increased Invasion Risk of <i>Tagetes minuta</i> L. in China under Climate Change: A Study of the Potential Geographical Distributions

Tagetes minuta L., a member of the Tageftes genus belonging to the Asteraceae family, is a well-documented exotic plant native to South America that has become established in China. In this study, 784 occurrence records and 12 environmental variables were used to predict the potential geographical distributions (PGDs) of T. minuta under current and future climatic changes using an optimized MaxEnt model. The results showed that (1) three out of the twelve variables contributed the most to the model performance: isothermality (bio3), precipitation in the driest quarter (bio17), and precipitation in the warmest quarter (bio18); (2) the PGDs of T. minuta under the current climate covered 62.06 × 104 km2, mainly in North, South, and Southwest China; and (3) climate changes will facilitate the expansion of the PGDs of T. minuta under three shared socioeconomic pathways (SSP 1-2.6, SSP2-4.5, and SSP5-8.5) in both the 2030s and 2050s. The centroid of suitable habitats under SSP2-4.5 moved the longest distance. T. minuta has the capacity to expand in China, especially in Yunnan, where there exist no occurrence records. Customs, ports, and adjacent regions should strengthen the quarantine of imported goods and mobile personnel for T. minuta, and introduced seedlings should be isolated to minimize their introduction risk

Predicting the Potential Suitable Area of the Invasive Ant Linepithema humile in China under Future Climatic Scenarios Based on Optimized MaxEnt

Linepithema humile (Mayr, 1868) (Hymenoptera: Formicidae) is one of &ldquo;100 of the world&rsquo;s worst invasive alien species&rdquo; listed by the International Union for Conservation of Nature and Natural Resources (IUCN). Although native to South America, this ant has spread worldwide via international trade. Currently, L. humile has not been found in China, and if it invades China, it might pose a potential risk to the native invertebrates, vertebrates, plants, and human livelihoods. Based on 2432 global occurrence records and ten bioclimatic variables, the optimized MaxEnt model was used to predict the potential suitable areas of L. humile in China. We analyzed the important bioclimatic variables affecting the potential suitable areas, and determined the changes in potential suitable areas under future climatic scenarios. Our results indicated that the mean temperature of the coldest quarter (Bio11), precipitation of the coldest quarter (Bio19), mean temperature of the wettest quarter (Bio8), and precipitation of the warmest quarter (Bio18) were the most important bioclimatic variables. Under the current climatic scenarios, the potential suitable area of L. humile in China is 80.31 &times; 104 km2, which is mainly located in Fujian, Zhejiang, Hunan, Jiangxi, Guangxi, Yunnan, and Hubei. Under future climate scenarios over coming decades, the potential suitable areas of L. humile showed an overall increase and a shift to higher latitudes, which indicated the invasion risk of L. humile in China will increase under climate change. Our findings provide the theoretical guidance for the early warning and monitoring of L. humile in China