Molecular characterization of tropical maize inbred lines using microsatellite DNA markers

An insight on diversity and relationships among germplasm is important in any breeding program for crop improve¬ment. The main objectives of our study were to: (i) determine the level of genetic diversity within mid altitude maize inbred lines resistant to weevils, aflatoxin accumulation and drought, (ii) to suggest potential heterotic groups using their genetic structures and distance based on cluster analysis with the aim to generate broad based source germ¬plasm for mid altitude maize breeding program with combined traits of importance against Aflatoxin accumulation. In this study, 25 SSR markers were used to finger print forty two maize inbred lines to assess the genetic diversity, genetic relationships, and their population structure. A total of 184 alleles were identified at all the loci with an aver¬age of 7.36 and a range between two and 19 alleles per locus. The major allele frequency varied from 0.17 to 0.90 with an average of 0.49 while the minor allele frequency varied from 0.10 to 0.83 with an average of 0.51. The gene diversity values varied from 0.18 to 0.92 with an average of 0.65. Average heterozygosity percentage of the inbred lines was 4%, ranging from 0% to 2%, indicating the low level of heterozygosity within the inbred lines. The aver¬age polymorphism information content (PIC) was 0.61. A dendrogram constructed using unweighted Neighbour Joining algorithm suggested three heterotic groups among the inbred lines. The three heterotic patterns based on the SSR markers need to be verified by field testing to confirm what appears to be promising alternative heterotic patterns. The fixed pattern detected using SSR markers could potentially contribute towards effective utilization of the inbred lines for the exploitation of heterosis and formation of genetically diverse sources population

Prioritization of invasive alien species with the potential to threaten agriculture and biodiversity in Kenya through horizon scanning

Invasive alien species (IAS) rank among the most significant drivers of species extinction and ecosystem degradation resulting in significant impacts on socio-economic development. The recent exponential spread of IAS in most of Africa is attributed to poor border biosecurity due to porous borders that have failed to prevent initial introductions. In addition, countries lack adequate information about potential invasions and have limited capacity to reduce the risk of invasions. Horizon scanning is an approach that prioritises the risks of potential IAS through rapid assessments. A group of 28 subject matter experts used an adapted methodology to assess 1700 potential IAS on a 5-point scale for the likelihood of entry and establishment, potential socio-economic impact, and impact on biodiversity. The individual scores were combined to rank the species according to their overall potential risk for the country. Confidence in individual and overall scores was recorded on a 3-point scale. This resulted in a priority list of 120 potential IAS (70 arthropods, 9 nematodes, 15 bacteria, 19 fungi/chromist, 1 viroid, and 6 viruses). Options for risk mitigation such as full pest risk analysis and detection surveys were suggested for prioritised species while species for which no immediate action was suggested, were added to the plant health risk register and a recommendation was made to regularly monitor the change in risk. By prioritising risks, horizon scanning guides resource allocation to interventions that are most likely to reduce risk and is very useful to National Plant Protection Organisations and other relevant stakeholders

Effect of Legume Extracts on Germination, Seedling Health of Beans (Phaseolus vulgaris L.) and Soil Microorganisms

Application of undecomposed green manure has been reported to cause poor emergence and establishment of common beans in the field. Therefore, to understand the mechanisms’ contributing to the poor crop establishment, the effect of extracts from fresh and decomposed legume green manures on bean seed germination, fungal mycelial growth, spore germination and germ tube elongation were evaluated. The extracts were prepared in either ethanol or distilled water. Data was collected on percentage seed germination, seedling length, mycelial radial growth, spore germination and germ tube elongation. Ethanol extracts from fresh lablab inhibited bean germination by 56%, increased mean germination time to 8 days, and decreased germination index while ethanol extracts of groundnut and beans caused highest inhibition in bean shoot length and reduced biomass. Ethanol extracts from fresh green manures significantly inhibited fungal mycelial growth while the aqueous extracts from beans, groundnuts and soybean had significant level of antifungal activity while aqueous lablab extracts stimulated mycelial. Aqueous extract of lablab and soybean enhanced spore germination by over 70% with more pronounced effect on germ tube length and number of germ tubes by 8.0% and 13% respectively. The study comparatively reveals that the extract of lablab was inhibitory to common bean germination compared to other legume extracts and also stimulated the growth of root rot pathogens that may have resulted in poor establishment of beans

Influence of socio‐economic and agronomic factors on aflatoxin and fumonisin contamination of maize in western Kenya

Consumption of maize contaminated with mycotoxins has been associated with detrimental health effects. A farm survey covering 116 push‐pull and 139 non‐push‐pull cropping systems was conducted to determine the socio‐economic and agronomic factors that influence farmers’ knowledge on incidence and contamination of maize by ear rots and associated mycotoxins in western Kenya. All the respondents were smallholder farmers between the ages of 23 and 80 years, with 50% of them being female. Maize samples were collected from the standing crop in the field of each interviewed farmer and analyzed for aflatoxin and fumonisin. Only a small proportion of farmers had knowledge of aflatoxin and ear rots in maize. Overall, less than 20% of maize samples were contaminated with both aflatoxin and fumonisin, and more maize samples were contaminated with fumonisin as compared to aflatoxin. Proportions of maize samples containing higher than the acceptable Kenyan regulatory threshold (10 µg/kg) for aflatoxin and European Commission regulatory threshold (1,000) µg/kg for fumonisin were lower in maize samples from push‐pull cropping system. Age of farmer and county of residence were significantly and positively associated with knowledge of aflatoxin, while cropping system, county of residence, and level of education were positively associated with knowledge of maize ear rots. There was strong correlation between knowledge of maize ear rots and knowledge of aflatoxin. Levels of both aflatoxin and fumonisin were significantly and positively associated with the use of diammonium phosphate (DAP) fertilizer at planting. Aflatoxin levels were also positively associated with stemborer damage. Agronomic practices were not significantly different between push‐pull and non‐push‐pull farmers. However, use of DAP fertilizer was the most important agronomic factor since it was associated with both aflatoxin and fumonisin contamination of maize. These results imply that creating awareness is key to mitigation of ear rots and mycotoxin contamination of maize. The results also suggest that the levels of aflatoxin and fumonisin in maize in western Kenya were influenced both by pre‐harvest agronomic practices and by the cropping system adopted, push‐pull or not