Transfer of organic carbon through marine water columns to sediments – insights from stable and radiocarbon isotopes of lipid biomarkers

© The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeosciences 11 (2014): 6895-6914, doi:10.5194/bg-11-6895-2014.Compound-specific 13C and 14C compositions of diverse lipid biomarkers (fatty acids, alkenones, hydrocarbons, sterols and fatty alcohols) were measured in sinking particulate matter collected in sediment traps and from underlying surface sediments in the Black Sea, the Arabian Sea and the Ross Sea. The goal was to develop a multiparameter approach to constrain relative inputs of organic carbon (OC) from marine biomass, terrigenous vascular-plant and relict-kerogen sources. Using an isotope mass balance, we calculate that marine biomass in sediment trap material from the Black Sea and Arabian Sea accounted for 66–100% of OC, with lower terrigenous (3–8%) and relict (4–16%) contributions. Marine biomass in sediments constituted lower proportions of OC (66–90%), with consequentially higher proportions of terrigenous and relict carbon (3–17 and 7–13%, respectively). Ross Sea data were insufficient to allow similar mass balance calculations. These results suggest that, whereas particulate organic carbon is overwhelmingly marine in origin, pre-aged allochthonous terrigenous and relict OC become proportionally more important in sediments, consistent with pre-aged OC being better preserved during vertical transport to and burial at the seafloor than the upper-ocean-derived marine OC.Grants OCE-9310364 and OCE-9911678 from the US National Science Foundation (NSF) and the NSF Cooperative Agreement for the Operation of a National Ocean Sciences Accelerator Mass Spectrometry Facility (OCE-0753487 and OCE-123966) supported this research. S. G. Wakeham acknowledges the Hanse Wissenschaftskolleg (Hanse Institute for Advanced Studies), Delmenhorst, Germany, for a fellowship that supported the writing of this manuscript

Organic geochemistry of particulate matter in the eastern tropical North Pacific Ocean: Implications for particle dynamics

Samples of marine particulate matter were collected in sediment traps and by in-situ filtration to depths of 1500 m during VERTEX II and III cruises in the eastern tropical North Pacific. Wax esters, triacylglycerols, fatty acids, sterols and steroidal ketones were analyzed in these samples to compare the compositions of organic matter associated with large sinking particulate aggregates sampled by sediment traps and with fine suspended material obtained by in-situ filtration. Distributions of specific compounds indicated that the organic chemical composition of large sinking particles and small suspended particles both in the euphotic zone and at mid-depth result from very distinct particle pools, not only in terms of particle size but also in their sources and transport mechanisms. Suspended particles in the epipelagic zone contain a mix of organic compounds derived from both phytoplankton and zooplankton sources, whereas sinking particles are dominated by zooplankton-derived compounds. In the mesopelagic zone, large, sinking particles contain organic compounds which are indicative of intensive alteration of organic matter, even though transport from the euphotic zone may have been rapid. On the other hand, it is the suspended particle pool which contains a remarkable abundance of labile organic compounds which can be attributed to undegraded phytoplankton cells rapidly delivered from surface waters. These organic geochemical results lead to a modified model of particle dynamics in which there are two distinct large, sinking particle pools which are differentially sampled by the two sampling techniques

Diagenesis of planktonic fatty acids and sterols in Long Island Sound sediments: Influences of a phytoplankton bloom and bottom water oxygen content

Diagenesis of organic matter in coastal sediments from Long Island Sound (LIS) was investigated by measuring fatty acids and sterols in (1) a time-series of surface sediment samples over a spring phytoplankton bloom; and (2) sediment cores collected during and after a bloom at two sites with distinctively different bottom-water oxygen contents. Time-dependent distributions of sedimentary fatty acids and sterols in LIS were strongly affected by pulsed inputs from the overlying water column, variations in benthic community, and redox-related degradation processes. The phytoplankton bloom delivered an intense pulse of unsaturated fatty acids (e.g., 16:1(ω7) and 20:5) to the surface sediments. Continuous increases of cholesterol and diunsaturated sterols after the bloom were related to zooplankton grazing processes and increase in benthic faunal abundance. High inventories of planktonic fatty acids and sterols in the upper 5 cm sediments were observed at the low oxygen site during summer, probably caused by a combination of higher input, reduced degradation rates and lower macrofaunal activity under anoxic conditions compared to oxic conditions

Isotopic compositions of lipid biomarker compounds in estuarine plants and surface sediments

We examined the isotopic compositions of fatty acids, sterols, and hydrocarbons isolated from three coastal macrophytes (Zostera marina, Spartina alterniflora, and Juncus roemerianus) in order to investigate the relative contribution of these vascular plants as sources of organic matter in coastal sediments such as Cape Lookout Eight, North Carolina. On average, lipid biomarker compounds extracted from the plants were depleted in C-13 by 3-5 parts per thousand relative to delta(13)C total organic carbon (TOC). However, individual compounds within each lipid class varied by up to 5.6 parts per thousand. Trends in the isotopic compositions of lipids were consistent with delta(13)C(TOC); compounds obtained from Z. marina were the most enriched in C-13 and those from J. roemerianus were the most depleted. The range in isotopic abundances and molecular compositions of the sediments was greater than that obtained from the plants, indicating that additional, presently unidentified sources of organic matter contribute to the Cape Lookout Eight sediments. Similarity between the signatures for suspended particulate matter and the sediments indicates that much of the sedimentary organic matter is derived from algal and bacterial sources. Bacterial sources of organic matter are Likely greater during summer/early fall, and incorporation of C-13-enriched bacterial biomass may contribute to observed seasonal shifts in delta(13)C(TOC) in the surficial sediments

Enhanced degradation of algal lipids by benthic macrofaunal activity: Effect of Yoldia limatula

We used the protobranch bivalve, Yoldia limatula, in a series of incubation experiments to test whether activities of deposit-feeding macrofauna cause differences in lipid degradation processes relative to controls lacking macrofauna. Uniformly 13C-labeled algae (13C \u3e 98%) were used as a source of fresh planktonic lipids, easily distinguished from bulk sedimentary lipids by GC/MS. Variations in concentration of major lipid components ([16:1(ω7), 16:0 and 18:1(ω9)] fatty acids and phytol) were followed as a function of time in incubations with and without Yoldia. Results showed that Yoldia can significantly enhance the degradation of planktonic lipids in sediments. Net degradation rate constants of lipids such as fatty acids and phytol in surface sediments were linearly correlated with abundance of Yoldia (in the range 230-1160 animals/m2). Yoldia altered the sediment and decomposition regime in several ways: (1) lipid-containing particles were ingested and then ejected into the oxic overlying water, with selective ingestion and digestion of different components; (2) particles were moved into subsurface regions by bioturbation; (3) sediment resuspension occurred, porosity increased, and dissolved oxygen and suboxic conditions penetrated deeper in the presence of Yoldia; (4) Yoldia grazed bacteria, influencing net degradation pathways of algal material, as indicated by higher accumulation of a bacteria-specific branched fatty acid and an intermediate C16 alcohol in the absence of Yoldia than in presence of Yoldia when plankton material was introduced as a pulse); (5) the activities of Yoldia enhanced solute exchange and altered the spatial and temporal patterns of redox reactions, as indicated by time-dependent depth distributions of Br (introduced tracer), ΣCO2 and NH4+ in the microcosms

Effects of poisons and preservatives on the composition of organic matter in a sediment trap experiment

Fluxes and molecular compositions of a group of major biochemical classes (lipids, lignin, pigments, amino acids, and carbohydrates) were compared among sediment traps treated with different poisons and preservatives and deployed for 1–2 months in a coastal marine environment. Fluxes and compositions of biochemicals were significantly more variable than bulk particle fluxes and elemental compositions. This observation was attributed to a greater influence of dead zooplankton “swimmers” in treated traps rather than differences in microbial decomposition due to the various treatments. Molecular compositions, especially of lipids, confirm the influence of zooplankton swimmers on the biochemical composition of the particulate material in treated traps compared to untreated controls even when large swimmers had been removed. An inventory of the major biochemicals we measured accounted for 25–45% of the organic carbon in our samples, with amino acids and sugars making up the bulk (80–90%) of the identified carbon

Vertical flux of fatty acids in the North Atlantic Ocean

The quantitative and qualitative composition of fatty acids in particulate material collected in traps deployed during 98 days at 389, 988, 3755 and 5068 m depths in the equatorial North Atlantic was determined. The fatty acid composition indicates a predominantly marine source (14:0, 16:0, 16:1, 18:0, 18:1, 20:5, 20:4, 22:6, 22:5) with possibly a minor terrigenous component in the bathypelagic traps. The vertical fluxes of fatty acids and lipids decrease rapidly with depth. The rate of net loss of carboxylic acids increases with number of double bonds and decreases with number of carbon atoms. Iso- and anteiso- as well as some monoenoic fatty acids are more persistent, probably due to enhanced microbial synthesis during settling which counteracts degradation

Effects of poisons and preservatives on the fluxes and elemental compositions of sediment trap materials

Bulk particle fluxes and organic elemental compositions were compared among sediment traps treated with different poisons and preservatives. The traps (3:1 open cylinders) were deployed for 1–2 months at 30 and 60 m depths in a coastal marine environment. The tested treatments included mercuric chloride, mixed antibiotics, sodium azide, formalin, chloroform, and salt, along with untreated controls. Fluxes of bulk particulate material and weight percentages of organic carbon measured for differently treated traps deployed simultaneously at the same depth both varied by an average of ±8% of the mean value. Great numbers of large (\u3e850 μm) zooplankton swimmers were removed by sieving from bulk sediment trap samples treated with formalin and mercuric chloride, and to a lesser extent from those treated with azide and chloroform. The \u3c850 μm “sediment” fractions of the formalin- and mercuric chloride-treated samples were characterized by slightly elevated %OC concentrations and lowered (C/N) ratios, apparently resulting from smaller swimmers that were not separated by sieving. Overall, problems involved with sample and treatment washout, and swimmer artifacts in poisoned traps affected measured fluxes and elemental compositions more than differences that could be clearly attributed to microbial degradation

Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian Sea

Intact core tetraether membrane lipids of marine planktonic Crenarchaeota were quantified in water column-suspended particulate matter obtained from four depth intervals (~70, 500, 1,000 and 1,500 m) at seven stations in the northwestern Arabian Sea to investigate the distribution of the organisms at various depths. Maximum concentrations generally occurred at 500 m, near the top of the oxygen minimum zone, and the concentrations at this depth were, in most cases, slightly higher than those in surface waters. In contrast, lipids derived from eukaryotes (cholesterol) and from eukaryotes and bacteria (fatty acids) were at their highest concentrations in surface waters. This indicates that these crenarchaeotes are not restricted to the photic zone of the ocean, which is consistent with the results of recent molecular biological studies. Since the Arabian Sea has a strong oxygen minimum zone between 100 and 1,000 m, with minimum oxygen levels of <1 μM, the abundance of crenarchaeotal membrane lipids at 500 m suggests that planktonic Crenarchaeota are probably facultative anaerobes. The cell numbers we calculated from the concentrations of membrane lipids are similar to those reported for the Central Pacific Ocean, supporting the recent estimation of M. B. Karner, E. F. DeLong, and D. M. Karl (Nature 409:507–510, 2001) that the world’s oceans contain ca. 10²⁸ cells of planktonic Crenarchaeota

Selective preservation of organic matter in marine environments; processes and impact on the sedimentary record

© The Authors, 2010. This article is distributed under the terms of the Creative Commons Attribution 3.0 License. The definitive version was published in Biogeosciences 7 (2010): 483-511, doi: 10.5194/bg-7-483-2010The present paper is the result of a workshop sponsored by the DFG Research Center/Cluster of Excellence MARUM "The Ocean in the Earth System", the International Graduate College EUROPROX, and the Alfred Wegener Institute for Polar and Marine Research. The workshop brought together specialists on organic matter degradation and on proxy-based environmental reconstruction. The paper deals with the main theme of the workshop, understanding the impact of selective degradation/preservation of organic matter (OM) in marine sediments on the interpretation of the fossil record. Special attention is paid to (A) the influence of the molecular composition of OM in relation to the biological and physical depositional environment, including new methods for determining complex organic biomolecules, (B) the impact of selective OM preservation on the interpretation of proxies for marine palaeoceanographic and palaeoclimatic reconstruction, and (C) past marine productivity and selective preservation in sediments. It appears that most of the factors influencing OM preservation have been identified, but many of the mechanisms by which they operate are partly, or even fragmentarily, understood. Some factors have not even been taken carefully into consideration. This incomplete understanding of OM breakdown hampers proper assessment of the present and past carbon cycle as well as the interpretation of OM based proxies and proxies affected by OM breakdown. To arrive at better proxy-based reconstructions "deformation functions" are needed, taking into account the transport and diagenesis-related molecular and atomic modifications following proxy formation. Some emerging proxies for OM degradation may shed light on such deformation functions. The use of palynomorph concentrations and selective changes in assemblage composition as models for production and preservation of OM may correct for bias due to selective degradation. Such quantitative assessment of OM degradation may lead to more accurate reconstruction of past productivity and bottom water oxygenation. Given the cost and effort associated with programs to recover sediment cores for paleoclimatological studies, as well as with generating proxy records, it would seem wise to develop a detailed sedimentological and diagenetic context for interpretation of these records. With respect to the latter, parallel acquisition of data that inform on the fidelity of the proxy signatures and reveal potential diagenetic biases would be of clear value.We acknowledge generous financial support by the DFG Research Center/Cluster of Excellence MARUM “The Ocean in the Earth System”, the International Graduate College EUROPROX and the Alfred Wegener Institute for Polar and Marine Research enabling the realisation of the “Workshop on Selective Preservation of Organic Matter: Processes and Impact on the Fossil Record” which formed the basis of this paper. GJMV acknowledges support by the German Science Foundation (DFG grant VE486/2)