Nonequilibrium dynamics of mixtures of active and passive colloidal particles

We develop a mesoscopic field theory for the collective nonequilibrium dynamics of multicomponent mixtures of interacting active (i.e., motile) and passive (i.e., nonmotile) colloidal particles with isometric shape in two spatial dimensions. By a stability analysis of the field theory, we obtain equations for the spinodal that describes the onset of a motility-induced instability leading to cluster formation in such mixtures. The prediction for the spinodal is found to be in good agreement with particle-resolved computer simulations. Furthermore, we show that in active-passive mixtures the spinodal instability can be of two different types. One type is associated with a stationary bifurcation and occurs also in one-component active systems, whereas the other type is associated with a Hopf bifurcation and can occur only in active-passive mixtures. Remarkably, the Hopf bifurcation leads to moving clusters. This explains recent results from simulations of active-passive particle mixtures, where moving clusters and interfaces that are not seen in the corresponding one-component systems have been observed.Comment: 17 pages, 3 figure

The anatomy of the tympanic sinus

The tympanic sinus is one of the most important structures of the human temporal bone. Located in its vicinity are the round window, posterior semicircular canal and facial nerve. The study was performed on 30 temporal bones taken from adult cadavers of both sexes. After the tympanic sinus had been identified, its morphological features were evaluated. The sinus was then measured using a graticule with an accuracy of 0.05 mm. Also measured were the shortest distances from the tympanic sinus to the neighbouring structures (the lateral and posterior semicircular canal, the facial nerve canal and the jugular fossa). The measurements were performed under a surgical microscope with eye-piece graduation of 0.05 mm accuracy. Four main morphological types of fossa of the tympanic sinus and two main developmental forms, a deep sinus and a shallow sinus, were distinguished. The existence of a deep sinus was associated with absence of the bridge and the sinus was shallower when the bridge was prominent. The very deep sinuses were located close to the facial canal, in some cases penetrating deep in its vicinity (in some cases even going beyond two thirds of the canal’s circumference), which poses a real risk of facial nerve damage during surgical removal of a lesion located in close proximity to the nerve. In most cases the tympanic sinus is elliptical in shape and its long diameter lies in the vertical plane (mean value: 2.73 × 2.23 mm). The mean distances from the tympanic sinus to the facial nerve canal, lateral semicircular canal, posterior semicircular canal and jugular fossa were 1.5 mm, 2.1 mm, 1.59 mm and 5.5 mm respectively. No correlation was observed between the measurement results and either sex or side

Stick boundary conditions and rotational velocity auto-correlation functions for colloidal particles in a coarse-grained representation of the solvent

We show how to implement stick boundary conditions for a spherical colloid in a solvent that is coarse-grained by the method of stochastic rotation dynamics. This allows us to measure colloidal rotational velocity auto-correlation functions by direct computer simulation. We find quantitative agreement with Enskog theory for short times and with hydrodynamic mode-coupling theory for longer times. For aqueous colloidal suspensions, the Enskog contribution to the rotational friction is larger than the hydrodynamic one when the colloidal radius drops below 35nm.Comment: new version with some minor change

Soil surveys: A window to the subsurface

Soils and underlying parent materials form a continuous system we must understand and manage in total. Numerous concerns (e.g., water quality, on-site waste disposal, landfill placement, and nutrient or pesticide movement) require an integrated knowledge and understanding of soil, the soil-to-substratum transition, and the deeper substratum. Soil C-horizons can exceed the thickness of the overlying A and B-horizons and contain unique morphological properties. The subsolum including C-horizons receives less descriptive emphasis than upper soil horizons. Soil scientists map and classify soils mainly on A and B-horizon properties. Soil forming and hydrologic processes that impart morphological features, however, extend considerably below these horizons. Precise adherence to Soil Taxonomy places an arbitrary constraint on field observations at 2 m. Soil scientists routinely observe C and R horizons and deeper underlying substrata in gravel pits, road cuts, barrow pits, foundation excavations, and drill cores, but provide less documentation than for upper horizons. Parent material and stratigraphy need more consideration in soil map unit design and delineation. Field observations by soil scientists below 2 m are crucial for understanding the subsolum (i.e., the morphology of, and relationships of solum to substratum). Soil surveys can convey concise and more descriptive soil-to-substrata information with little added effort or resources. Soil surveys can accomplish this end by use of block diagrams, parent material maps, and geomorphic maps that include both pedostratigraphic and lithostratigraphic detail. Soil surveys must develop soil and map unit descriptions linked to measured sections and named stratigraphic units, and describe and analyze soils and parent materials to greater depths (\u3e2 m). We use case examples to demonstrate these concepts. Soil-to-substrata documentation and presentation conveys crucial information to soil survey users. Soil-to-substrata relationships identified and recorded during a soil survey create a knowledge window to the subsurface

Rapid online buffer exchange for screening of proteins, protein complexes and cell lysates by native mass spectrometry

It is important to assess the identity and purity of proteins and protein complexes during and after protein purification to ensure that samples are of sufficient quality for further biochemical and structural characterization, as well as for use in consumer products, chemical processes and therapeutics. Native mass spectrometry (nMS) has become an important tool in protein analysis due to its ability to retain non-covalent interactions during measurements, making it possible to obtain protein structural information with high sensitivity and at high speed. Interferences from the presence of non-volatiles are typically alleviated by offline buffer exchange, which is time-consuming and difficult to automate. We provide a protocol for rapid online buffer exchange (OBE) nMS to directly screen structural features of pre-purified proteins, protein complexes or clarified cell lysates. In the liquid chromatography coupled to mass spectrometry (LC-MS) approach described in this protocol, samples in MS-incompatible conditions are injected onto a short size-exclusion chromatography column. Proteins and protein complexes are separated from small molecule non-volatile buffer components using an aqueous, non-denaturing mobile phase. Eluted proteins and protein complexes are detected by the mass spectrometer after electrospray ionization. Mass spectra can inform regarding protein sample purity and oligomerization, and additional tandem mass spectra can help to further obtain information on protein complex subunits. Information obtained by OBE nMS can be used for fast (<5 min) quality control and can further guide protein expression and purification optimization

Spin-density fluctuations and the fluctuation-dissipation theorem in 3d ferromagnetic metals

Spatial and time scales of spin density fluctuations (SDF) were analyzed in 3d ferromagnets using ab initio linear response calculations of complete wavevector and energy dependence of the dynamic spin susceptibility tensor. We demonstrate that SDF are spread continuously over the entire Brillouin zone and while majority of them reside within the 3d bandwidth, a significant amount comes from much higher energies. A validity of the adiabatic approximation in spin dynamics is discussed. The SDF spectrum is shown to have two main constituents: a minor low-energy spin wave contribution and a much larger high-energy component from more localized excitations. Using the fluctuation-dissipation theorem (FDT), the on-site spin correlator (SC) and the related effective fluctuating moment were properly evaluated and their universal dependence on the 3d band population is further discussed

PHENIX first measurement of the J/psi elliptic flow parameter v2 in Au+Au collisions at sqrt(sNN) = 200 GeV

Recent results indicate that the J/psi suppression pattern differs with rapidity showing a larger suppression at forward rapidity. J/psi suppression mechanisms based on energy density (such as color screening, interaction with co-movers, etc.) predict the opposite trend. On the other hand, it is expected that more c\bar{c} pairs should be available to form quarkonia at mid-rapidity via recombination. Some models provide a way to differentiate J/psi production from initially produced c\bar{c} pairs and final state recombination of uncorrelated pairs, via the rapidity and transverse momentum dependence of the elliptic flow (v2). During 2007 data taking at RHIC, a large sample of Au+Au collisions at sqrt(sNN)=200 GeV was collected. The statistics has been increased compared to previous 2004 data set, thus allowing a more precise measurement of the J/psi production at both mid and forward rapidity. Furthermore, the PHENIX experiment benefited from the addition of a new detector, which improves the reaction plane resolution and allows us to measure the J/psi v2. Comparing this measurement to the positive D-mesons v2 (through non-photonic electron decays) will help constraining the J/psi production mechanisms and getting a more precise picture of the proportion of J/psi coming from direct production or charm quark coalescence. Details on how the J/psi v2 is measured at both rapidities are presented. The J/psi v2 as a function of transverse momentum are compared to existing models.Comment: 4 pages, 3 figures, Quark Matter 2008 proceeding

Dynamics of lane formation in driven binary complex plasmas

The dynamical onset of lane formation is studied in experiments with binary complex plasmas under microgravity conditions. Small microparticles are driven and penetrate into a cloud of big particles, revealing a strong tendency towards lane formation. The observed time-resolved lane formation process is in good agreement with computer simulations of a binary Yukawa model with Langevin dynamics. The laning is quantified in terms of the anisotropic scaling index, leading to a universal order parameter for driven systems.Comment: 4 pages, 3 figures, movies available at http://www.mpe.mpg.de/pke/lane-formation