Genome-enabled insights into the biology of thrips as crop pests

Background The western flower thrips,Frankliniella occidentalis(Pergande), is a globally invasive pest and plant virus vector on a wide array of food, fiber, and ornamental crops. The underlying genetic mechanisms of the processes governing thrips pest and vector biology, feeding behaviors, ecology, and insecticide resistance are largely unknown. To address this gap, we present theF. occidentalisdraft genome assembly and official gene set.Results We report on the first genome sequence for any member of the insect order Thysanoptera. Benchmarking Universal Single-Copy Ortholog (BUSCO) assessments of the genome assembly (size = 415.8 Mb, scaffold N50 = 948.9 kb) revealed a relatively complete and well-annotated assembly in comparison to other insect genomes. The genome is unusually GC-rich (50%) compared to other insect genomes to date. The official gene set (OGS v1.0) contains 16,859 genes, of which similar to 10% were manually verified and corrected by our consortium. We focused on manual annotation, phylogenetic, and expression evidence analyses for gene sets centered on primary themes in the life histories and activities of plant-colonizing insects. Highlights include the following: (1) divergent clades and large expansions in genes associated with environmental sensing (chemosensory receptors) and detoxification (CYP4, CYP6, and CCE enzymes) of substances encountered in agricultural environments; (2) a comprehensive set of salivary gland genes supported by enriched expression; (3) apparent absence of members of the IMD innate immune defense pathway; and (4) developmental- and sex-specific expression analyses of genes associated with progression from larvae to adulthood through neometaboly, a distinct form of maturation differing from either incomplete or complete metamorphosis in the Insecta.Conclusions Analysis of theF. occidentalisgenome offers insights into the polyphagous behavior of this insect pest that finds, colonizes, and survives on a widely diverse array of plants. The genomic resources presented here enable a more complete analysis of insect evolution and biology, providing a missing taxon for contemporary insect genomics-based analyses. Our study also offers a genomic benchmark for molecular and evolutionary investigations of other Thysanoptera species.Animal science

Quality of poultry litter submitted to different treatments in five consecutive flocks Qualidade da cama de frango submetida a diferentes tratamentos em cinco lotes consecutivos

It was evaluated the effects of poultry litter treatment on moisture content, pH, density and volatilized ammonia for five consecutive flocks of broiler chicken breeding. It was used 640 birds per flock as a complete randomized design with eight treatments and four replicates. The treatments were the following: 1 non-treated litter; 2 litter submitted to in-house composting; 3 litter treated with aluminum sulfate; 4 litter submitted to gypsum; 5 litter treated with quicklime; 6 litter treated with dolomitic limestone; 7 litter treated with zeolite and 8 litter treated with charcoal. Chopped elephant-grass hay was used as poultry litter in all flocks. Fermentation in the shed increased moisture content of the litters in the second and first flocks on 21 and 42 days of breeding, respectively. There was no difference on density among treatments. Aluminum sulfate reduced pH of the litters in all flocks at 21 days of breding. On 42 days of breeding, pH of the litters was reduced in the litters with aluminum sulfate and gypsum in the first, second and forth flocks. On 21 days, aluminum sulfate reduced the volatilized ammonia in the first, third and forth flocks, and on 42 days, there was a reduction of volatilized ammonia in the litters with aluminum sulfate in the forth flock. Aluminum sulfate can improve quality of poultry litter of chopped elephant-grass hay by reducing pH and ammonia volatilization.<br>Foram avaliados os efeitos do tratamento da cama de frango sobre o teor de umidade, o pH, a densidade e a amônia volatilizada durante cinco lotes consecutivos de criação de frangos de corte. Foram utilizadas 640 aves por lote em delineamento inteiramente casualizado com oito tratamentos e quatro repetições. Os tratamentos foram: 1 cama não-tratada; 2 cama submetida à compostagem dentro do galpão; 3 cama tratada com sulfato de alumínio; 4 cama tratada com gesso agrícola; 5 cama tratada com cal virgem; 6 cama tratada com calcário dolomítico; 7 cama tratada com zeolita; e 8 cama tratada com carvão vegetal. O feno de capim-elefante picado foi utilizado como cama de frango em todos os lotes. A fermentação no galpão aumentou o teor de umidade das camas no segundo e primeiro lotes aos 21 e 42 dias de criação, respectivamente. Não houve diferença na densidade entre os tratamentos. O sulfato de alumínio reduziu o pH das camas em todos os lotes aos 21 dias de criação. Aos 42 dias, o pH das camas foi reduzido nas camas contendo sulfato de alumínio e gesso agrícola no primeiro, segundo e quarto lotes. Aos 21 dias, o sulfato de alumínio reduziu a amônia volatilizada no primeiro, terceiro e quarto lotes e, aos 42 dias, houve redução da amônia volatilizada das camas contendo sulfato de alumínio no quarto lote. O sulfato de alumínio pode melhorar a qualidade da cama de frango de feno de capim-elefante picado, por reduzir o pH e a volatilização de amônia

Erratum: "The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species", [Genome Biol. (2016), 17, (192)]

After publication of our recent article [1] we noticed that Monica Munoz-Torres had been omitted from the author list. We have now added her, and the updated Funding and Authors' contributions sections are below. © The Author(s). 2017