62 research outputs found

    Organometallic indolo[3,2-c]quinolines versus indolo[3,2-d]benzazepines: synthesis, structural and spectroscopic characterization, and biological efficacy

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    The synthesis of ruthenium(II) and osmium(II) arene complexes with the closely related indolo[3,2-c]quinolines N-(11H-indolo[3,2-c]quinolin-6-yl)-ethane-1,2-diamine (L1) and Nā€²-(11H-indolo[3,2-c]quinolin-6-yl)-N,N-dimethylethane-1,2-diamine (L2) and indolo[3,2-d]benzazepines N-(7,12-dihydroindolo-[3,2-d][1]benzazepin-6-yl)-ethane-1,2-diamine (L3) and Nā€²-(7,12-dihydroindolo-[3,2-d][1]benzazepin-6-yl)-N,N-dimethylethane-1,2-diamine (L4) of the general formulas [(Ī·6-p-cymene)MII(L1)Cl]Cl, where MĀ isĀ Ru (4) and Os (6), [(Ī·6-p-cymene)MII(L2)Cl]Cl, where MĀ isĀ Ru (5) and Os (7), [(Ī·6-p-cymene)MII(L3)Cl]Cl, where MĀ isĀ Ru (8) and Os (10), and [(Ī·6-p-cymene)MII(L4)Cl]Cl, where MĀ isĀ Ru (9) and Os (11), is reported. The compounds have been comprehensively characterized by elemental analysis, electrospray ionization mass spectrometry, spectroscopy (IR, UVā€“vis, and NMR), and X-ray crystallography (L1Ā·HCl, 4Ā·H2O, 5, and 9Ā·2.5H2O). Structureā€“activity relationships with regard to cytotoxicity and cell cycle effects in human cancer cells as well as cyclin-dependent kinase (cdk) inhibition and DNA intercalation in cell-free settings have been established. The metal-free indolo[3,2-c]quinolines inhibit cancer cell growth in vitro, with IC50 values in the high nanomolar range, whereas those of the related indolo[3,2-d]benzazepines are in the low micromolar range. In cell-free experiments, these classes of compounds inhibit the activity of cdk2/cyclin E, but the much higher cytotoxicity and stronger cell cycle effects of indoloquinolines L1 and 7 are not paralleled by a substantially higher kinase inhibition compared with indolobenzazepines L4 and 11, arguing for additional targets and molecular effects, such as intercalation into DNA

    Snake Cytotoxins Bind to Membranes via Interactions with Phosphatidylserine Head Groups of Lipids

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    The major representatives of Elapidae snake venom, cytotoxins (CTs), share similar three-fingered fold and exert diverse range of biological activities against various cell types. CT-induced cell death starts from the membrane recognition process, whose molecular details remain unclear. It is known, however, that the presence of anionic lipids in cell membranes is one of the important factors determining CT-membrane binding. In this work, we therefore investigated specific interactions between one of the most abundant of such lipids, phosphatidylserine (PS), and CT 4 of Naja kaouthia using a combined, experimental and modeling, approach. It was shown that incorporation of PS into zwitterionic liposomes greatly increased the membrane-damaging activity of CT 4 measured by the release of the liposome-entrapped calcein fluorescent dye. The CT-induced leakage rate depends on the PS concentration with a maximum at approximately 20% PS. Interestingly, the effects observed for PS were much more pronounced than those measured for another anionic lipid, sulfatide. To delineate the potential PS binding sites on CT 4 and estimate their relative affinities, a series of computer simulations was performed for the systems containing the head group of PS and different spatial models of CT 4 in aqueous solution and in an implicit membrane. This was done using an original hybrid computational protocol implementing docking, Monte Carlo and molecular dynamics simulations. As a result, at least three putative PS-binding sites with different affinities to PS molecule were delineated. Being located in different parts of the CT molecule, these anion-binding sites can potentially facilitate and modulate the multi-step process of the toxin insertion into lipid bilayers. This feature together with the diverse binding affinities of the sites to a wide variety of anionic targets on the membrane surface appears to be functionally meaningful and may adjust CT action against different types of cells

    A Complete Analysis of HA and NA Genes of Influenza A Viruses

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    BACKGROUND: More and more nucleotide sequences of type A influenza virus are available in public databases. Although these sequences have been the focus of many molecular epidemiological and phylogenetic analyses, most studies only deal with a few representative sequences. In this paper, we present a complete analysis of all Haemagglutinin (HA) and Neuraminidase (NA) gene sequences available to allow large scale analyses of the evolution and epidemiology of type A influenza. METHODOLOGY/PRINCIPAL FINDINGS: This paper describes an analysis and complete classification of all HA and NA gene sequences available in public databases using multivariate and phylogenetic methods. CONCLUSIONS/SIGNIFICANCE: We analyzed 18,975 HA sequences and divided them into 280 subgroups according to multivariate and phylogenetic analyses. Similarly, we divided 11,362 NA sequences into 202 subgroups. Compared to previous analyses, this work is more detailed and comprehensive, especially for the bigger datasets. Therefore, it can be used to show the full and complex phylogenetic diversity and provides a framework for studying the molecular evolution and epidemiology of type A influenza virus. For more than 85% of type A influenza HA and NA sequences into GenBank, they are categorized in one unambiguous and unique group. Therefore, our results are a kind of genetic and phylogenetic annotation for influenza HA and NA sequences. In addition, sequences of swine influenza viruses come from 56 HA and 45 NA subgroups. Most of these subgroups also include viruses from other hosts indicating cross species transmission of the viruses between pigs and other hosts. Furthermore, the phylogenetic diversity of swine influenza viruses from Eurasia is greater than that of North American strains and both of them are becoming more diverse. Apart from viruses from human, pigs, birds and horses, viruses from other species show very low phylogenetic diversity. This might indicate that viruses have not become established in these species. Based on current evidence, there is no simple pattern of inter-hemisphere transmission of avian influenza viruses and it appears to happen sporadically. However, for H6 subtype avian influenza viruses, such transmissions might have happened very frequently and multiple and bidirectional transmission events might exist

    The thrombotic potential of oral pathogens

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    In recent times the concept of infectious agents playing a role in cardiovascular disease has attracted much attention. Chronic oral disease such as periodontitis, provides a plausible route for entry of bacteria to the circulation. Upon entry to the circulation, the oral bacteria interact with platelets. It has been proposed that their ability to induce platelet aggregation and support platelet adhesion is a critical step in the pathogenesis of the infection process. Many published studies have demonstrated multiple mechanisms through which oral bacteria are able to bind to and activate platelets. This paper will review the various mechanisms oral bacteria use to interact with platelets

    Neoadjuvant treatment of pancreatic adenocarcinoma: a systematic review and meta-analysis of 5520 patients

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    Structures and photoluminescence of dinuclear platimun(II) and palladium(II) complexes with bridging thiolates and 2,2ā€²-bipyridine or 2,2ā€²:6prime;,2ā€³-terpyridine ligands

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    A series of mononuclear and dinuclear platinum(II) thiolates with 2,2ā€²-bipyridine (bpy) and 2,2ā€²:6ā€²,2ā€³-terpyridine (terpy) ligands having emissive LLCT (ligand-to-ligand charge-transfer) excited states were prepared and characterized by X-ray diffraction analyses. The [M2(dtbpy)2(NS)2][ClO4]2 (M = Pt or Pd; dtbpy = 4,4ā€²-di-tert-butyl-2,2ā€²-bipyridine, NS = pyridine-2-thiolate) complexes are isostructural to each other with intramolecular Pt ā‹ÆPt and Pdā‹ÆPd distances being 2.917(2) and 2.891(4) ƅ, respectively. Assignment of LLCT absorption bands for the platinum(II) complexes was based on the shift in absorption energy with the substituents on the diimine and thiolate ligands. In the solid state or in solution at room temperature the platinum(II) complexes show photoluminescence with Ī»max ranging from 603 to 710 nm. The PtIIā‹ÆPtII and/or ligand-ligand interactions are not primarily responsible for the emissions of the dinuclear platinum(II) thiolates which have intramolecular metal- metal separations greater than 2.9 ƅ.link_to_subscribed_fulltex

    Feasibility study of volumetric modulated arc therapy for the treatment of retroperitoneal sarcomas

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    <p>Abstract</p> <p>Background</p> <p>Radiotherapy for retroperitoneal sarcomas remains controversial and a technical challenge considering the threshold of contiguous critical organs tolerance. We performed consecutive RapidArc dosimetric plans in preoperative or postoperative setting.</p> <p>Methods</p> <p>A dosimetric study was carried out from six preoperative (group A) and four postoperative (group B) CT-scans, performed in 7 patients.</p> <p>Prescribed dose was 45 and 50 Gy for groups A and B, respectively. The planning target volume (PTV) was defined as the clinical target volume (CTV) plus 5 mm. The CTV encompassed the gross tumor volume (GTV) plus 10 mm or the tumoral bed. The dosimetric plans were optimized on a RapidArc Eclipse console using the progressive resolution algorithm, PRO version 8.8. Normalization method allowed the coverage of 99% of the PTV by 95% of the dose.</p> <p>Results</p> <p>Mean PTV were 2318.5 Ā± 2223.9 cc [range 348-6198 cc] and 698.3 Ā± 216.6 cc [range 463 -933 cc] for groups A and B, respectively. Plans were optimized for single arcs in group B and for single or two arcs in group A. The contralateral kidney volume receiving 5 Gy (V<sub>5Gy</sub>) was 21.5 Ā± 23.3% [range 0-55%] and 3.1 Ā± 2.6% [range 0-7.3%] for groups A and B, respectively. The mean dose received by 1% of the kidney (D<sub>1%</sub>) was 5.6 Ā± 2.4 Gy [range 3.6 -7.6 Gy] for group A and 5.4 Ā± 0.7 Gy [range 4.3-6 Gy] for group B. The volume of small bowel excluding the PTV (small bowel-PTV) that received 40 Gy and 30 Gy (V<sub>40Gy </sub>and V<sub>30Gy</sub>) in group A were 7.5 Ā± 4.4% [range 5.4-14.1%] and 18.5 Ā± 7.1% [range 10-30.4%], respectively.</p> <p>In group B, small bowel-PTV V<sub>40Gy </sub>and V<sub>30Gy </sub>were 4.7 Ā± 3.3% [range 3.3-8%] and 21.6 Ā± 7.5% [range 9.4-30%] respectively. In a second step, we treated two patients in the postoperative group. Treatment time delivery with one arc was 74 seconds. No severe acute toxicity was observed.</p> <p>Conclusion</p> <p>RapidArc technology for retroperitoneal sarcomas showed acceptable dosimetric results in preoperative or postoperative clinical situation. From the first treated patients, acute tolerability was good to excellent.</p
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