Coherently controlled entanglement generation in a binary Bose-Einstein condensate

Considering a two-component Bose-Einstein condensate in a double-well potential, a method to generate a Bell state consisting of two spatially separated condensates is suggested. For repulsive interactions, the required tunnelling control is achieved numerically by varying the amplitude of a sinusoidal potential difference between the wells. Both numerical and analytical calculations reveal the emergence of a highly entangled mesoscopic state.Comment: 6 pages, 6 figures, epl2.cl

Fractional photon-assisted tunneling in an optical superlattice: large contribution to particle transfer

Fractional photon-assisted tunneling is investigated both analytically and numerically for few interacting ultra-cold atoms in the double-wells of an optical superlattice. This can be realized experimentally by adding periodic shaking to an existing experimental setup [Phys. Rev. Lett. 101, 090404 (2008)]. Photon-assisted tunneling is visible in the particle transfer between the wells of the individual double wells. In order to understand the physics of the photon-assisted tunneling, an effective model based on the rotating wave approximation is introduced. The validity of this effective approach is tested for wide parameter ranges which are accessible to experiments in double-well lattices. The effective model goes well beyond previous perturbation theory approaches and is useful to investigate in particular the fractional photon-assisted tunneling resonances. Analytic results on the level of the experimentally realizable two-particle quantum dynamics show very good agreement with the numerical solution of the time-dependent Schr\"odinger equation. Far from being a small effect, both the one-half-photon and the one-third-photon resonance are shown to have large effects on the particle transfer.Comment: 9 pages, 11 png-figure

The influence of oxygen and oxidative stress on <i>de novo</i> acquisition of antibiotic resistance in <i>E. coli</i> and <i>Lactobacillus lactis</i>

Background: Bacteria can acquire resistance through DNA mutations in response to exposure to sub-lethal concentrations of antibiotics. According to the radical-based theory, reactive oxygen species (ROS), a byproduct of the respiratory pathway, and oxidative stress caused by reactive metabolic byproducts, play a role in cell death as secondary killing mechanism. In this study we address the question whether ROS also affects development of resistance, in the conditions that the cells is not killed by the antibiotic. Results: To investigate whether oxygen and ROS affect de novo acquisition of antibiotic resistance, evolution of resistance due to exposure to non-lethal levels of antimicrobials was compared in E. coli wildtype and ΔoxyR strains under aerobic and anaerobic conditions. Since Lactococcus lactis (L. lactis) does not have an active electron transport chain (ETC) even in the presence of oxygen, and thus forms much less ROS, resistance development in L. lactis was used to distinguish between oxygen and ROS. The resistance acquisition in E. coli wildtype under aerobic and anaerobic conditions did not differ much. However, the aerobically grown ΔoxyR strain gained resistance faster than the wildtype or anaerobic ΔoxyR. Inducing an ETC by adding heme increased the rate at which L. lactis acquired resistance. Whole genome sequencing identified specific mutations involved in the acquisition of resistance. These mutations were specific for each antibiotic. The lexA mutation in ΔoxyR strain under aerobic conditions indicated that the SOS response was involved in resistance acquisition. Conclusions: The concept of hormesis can explain the beneficial effects of low levels of ROS and reactive metabolic byproducts, while high levels are lethal. DNA repair and mutagenesis may therefore expedite development of resistance. Taken together, the results suggest that oxygen as such barely affects resistance development. Nevertheless, non-lethal levels of ROS stimulate de novo acquisition of antibiotic resistance

Bose-Einstein condensates in a double well: mean-field chaos and multi-particle entanglement

A recent publication [Phys. Rev. Lett. 100, 140408 (2008)] shows that there is a relation between mean-field chaos and multi-particle entanglement for BECs in a periodically shaken double well. 'Schrodinger-cat' like mesoscopic superpositions in phase-space occur for conditions for which the system displays mean-field chaos. In the present manuscript, more general highly-entangled states are investigated. Mean-field chaos accelerates the emergence of multi-particle entanglement; the boundaries of stable regions are particularly suited for entanglement generation.Comment: 5 Pages, 5 jpg-figures, to be published in the proceedings of the LPHYS0

Strong coupling expansion for the Bose-Hubbard and the Jaynes-Cummings lattice model

A strong coupling expansion, based on the Kato-Bloch perturbation theory, which has recently been proposed by Eckardt et al. [Phys. Rev. B 79, 195131] and Teichmann et al. [Phys. Rev. B 79, 224515] is implemented in order to study various aspects of the Bose-Hubbard and the Jaynes-Cummings lattice model. The approach, which allows to generate numerically all diagrams up to a desired order in the interaction strength is generalized for disordered systems and for the Jaynes-Cummings lattice model. Results for the Bose-Hubbard and the Jaynes-Cummings lattice model will be presented and compared with results from VCA and DMRG. Our focus will be on the Mott insulator to superfluid transition.Comment: 29 pages, 21 figure

Single-cell temporal analysis of natural dengue infection reveals skin-homing lymphocyte expansion one day before defervescence.

Effective clinical management of acute dengue virus (DENV) infection relies on the timing of suitable treatments during the disease progression. We analyzed single-cell transcriptomic profiles of the peripheral blood mononuclear cell samples from two DENV patients, collected daily during acute phase and also at convalescence. Key immune cell types demonstrated different dynamic responses over the course of the infection. On the day before defervescence (Day -1), we observed the peak expression of several prominent genes in the adaptive immunological pathways. We also characterized unique effector T cell clusters that expressed skin-homing signature genes at Day -1, whereas upregulation of skin and gut homing genes was also observed in plasma cells and plasmablasts during the febrile period. This work provides an overview of unique molecular dynamics that signify the entry of the critical phase, and the findings could improve the patient management of DENV infection

Axonopathy in the central nervous system is the hallmark of mice with a novel intragenic null mutation of dystonin.

Dystonia musculorum is a neurodegenerative disorder caused by a mutation in the dystonin gene. It has been described in mice and humans where it is called hereditary sensory autonomic neuropathy. Mutated mice show severe movement disorders and die at the age of 3-4 weeks. This study describes the discovery and molecular, clinical, as well as pathological characterization of a new spontaneously occurring mutation in the dystonin gene in C57BL/6N mice. The mutation represents a 40-kb intragenic deletion allele of the dystonin gene on chromosome 1 with exactly defined deletion borders. It was demonstrated by Western blot, mass spectrometry, and immunohistology that mice with a homozygous mutation were entirely devoid of the dystonin protein. Pathomorphological lesions were restricted to the brain stem and spinal cord and consisted of swollen, argyrophilic axons and dilated myelin sheaths in the white matter and, less frequently, total chromatolysis of neurons in the gray matter. Axonal damage was detected by amyloid precursor protein and nonphosphorylated neurofilament immunohistology. Axonopathy in the central nervous system (CNS) represents the hallmark of this disease. Mice with the dystonin mutation also showed suppurative inflammation in the respiratory tract, presumably due to brain stem lesion-associated food aspiration, whereas skeletal muscles showed no pathomorphological changes. This study describes a novel mutation in the dystonin gene in mice leading to axonopathy in the CNS. In further studies, this model may provide new insights into the pathogenesis of neurodegenerative diseases and may elucidate the complex interactions of dystonin with various other cellular proteins especially in the CNS

Widespread occurrence of non-canonical transcription termination by human RNA polymerase III

Human RNA polymerase (Pol) III-transcribed genes are thought to share a simple termination signal constituted by four or more consecutive thymidine residues in the coding DNA strand, just downstream of the RNA 3′-end sequence. We found that a large set of human tRNA genes (tDNAs) do not display any T≥4 stretch within 50 bp of 3′-flanking region. In vitro analysis of tDNAs with a distanced T≥4 revealed the existence of non-canonical terminators resembling degenerate T≥5 elements, which ensure significant termination but at the same time allow for the production of Pol III read-through pre-tRNAs with unusually long 3′ trailers. A panel of such non-canonical signals was found to direct transcription termination of unusual Pol III-synthesized viral pre-miRNA transcripts in gammaherpesvirus 68-infected cells. Genome-wide location analysis revealed that human Pol III tends to trespass into the 3′-flanking regions of tDNAs, as expected from extensive terminator read-through. The widespread occurrence of partial termination suggests that the Pol III primary transcriptome in mammals is unexpectedly enriched in 3′-trailer sequences with the potential to contribute novel functional ncRNA

Process chain approach to the Bose-Hubbard model: Ground-state properties and phase diagram

We carry out a perturbative analysis, of high order in the tunneling parameter, of the ground state of the homogeneous Bose-Hubbard model in the Mott insulator phase. This is made possible by a diagrammatic process chain approach, derived from Kato's representation of the many-body perturbation series, which can be implemented numerically in a straightforward manner. We compute ground-state energies, atom-atom correlation functions, density-density correlations, and occupation number fluctuations, for one-, two-, and three-dimensional lattices with arbitrary integer filling. A phenomenological scaling behavior is found which renders the data almost independent of the filling factor. In addition, the process chain approach is employed for calculating the boundary between the Mott insulator phase and the superfluid phase with high accuracy. We also consider systems with dimensionalities d>3, thus monitoring the approach to the mean-field limit. The versatility of the method suggests further applications to other systems which are less well understood.Comment: 15 pages, 20 figure