174 research outputs found
Frequency evaluation of the doubly forbidden transition in bosonic Yb
We report an uncertainty evaluation of an optical lattice clock based on the
transition in the bosonic isotope Yb by use
of magnetically induced spectroscopy. The absolute frequency of the
transition has been determined through comparisons
with optical and microwave standards at NIST. The weighted mean of the
evaluations is (Yb)=518 294 025 309 217.8(0.9) Hz. The uncertainty
due to systematic effects has been reduced to less than 0.8 Hz, which
represents in fractional frequency.Comment: 4 pages, 3 figure -Submitted to PRA Rapid Communication
Testing the stability of fundamental constants with the 199Hg+ single-ion optical clock
Over a two-year duration, we have compared the frequency of the 199Hg+ 5d106s
2S 1/2 (F=0) 5d9 6s2 2D 5/2 (F=2) electric-quadrupole transition at 282 nm
with the frequency of the ground-state hyperfine splitting in neutral 133Cs.
These measurements show that any fractional time variation of the ratio
nu(Cs)/nu(Hg) between the two frequencies is smaller than +/- 7 10^-15 / yr (1
sigma uncertainty). According to recent atomic structure calculations, this
sets an upper limit to a possible fractional time variation of g(Cs) m_e / m_p
alpha^6.0 at the same level.Comment: 4 pages with 3 figures. RevTeX 4, Submitted to Phys. Rev. Let
I'll take that to go:Big data bags and minimal identifiers for exchange of large, complex datasets
Big data workflows often require the assembly and exchange of complex, multi-element datasets. For example, in biomedical applications, the input to an analytic pipeline can be a dataset consisting thousands of images and genome sequences assembled from diverse repositories, requiring a description of the contents of the dataset in a concise and unambiguous form. Typical approaches to creating datasets for big data workflows assume that all data reside in a single location, requiring costly data marshaling and permitting errors of omission and commission because dataset members are not explicitly specified.
We address these issues by proposing simple methods and tools for assembling, sharing, and analyzing large and complex datasets that scientists can easily integrate into their daily workflows. These tools combine a simple and robust method for describing data collections (BDBags), data descriptions (Research Objects), and simple persistent identifiers (Minids) to create a powerful ecosystem of tools and services for big data analysis and sharing.
We present these tools and use biomedical case studies to illustrate their use for the rapid assembly, sharing, and analysis of large datasets
Zitterbewegung in External Magnetic Field: Classic versus Quantum Approach
We investigate variations of the Zitterbewegung frequency of electron due to
an external static and uniform magnetic field employing the expectation value
quantum approach, and compare our results with the classical model of spinning
particles. We demonstrate that these two so far compatible approaches are not
in agreement in the presence of an external uniform static magnetic field, in
which the classical approach breaks the usual symmetry of free particles and
antiparticles states, i.e. it leads to CP violation. Hence, regarding the
Zitterbewegung frequency of electron, the classical approach in the presence of
an external magnetic field is unlikely to correctly describe the spin of
electron, while the quantum approach does, as expected. We also show that the
results obtained via the expectation value are in close agreement with the
quantum approach of the Heisenberg picture derived in the literature. However,
the method we use is capable of being compared with the classical approach
regarding the spin aspects. The classical interpretation of spin produced by
the altered Zitterbewegung frequency, in the presence of an external magnetic
field, are discussed.Comment: 16 pages, no figure
Reproducible big data science: A case study in continuous FAIRness.
Big biomedical data create exciting opportunities for discovery, but make it difficult to capture analyses and outputs in forms that are findable, accessible, interoperable, and reusable (FAIR). In response, we describe tools that make it easy to capture, and assign identifiers to, data and code throughout the data lifecycle. We illustrate the use of these tools via a case study involving a multi-step analysis that creates an atlas of putative transcription factor binding sites from terabytes of ENCODE DNase I hypersensitive sites sequencing data. We show how the tools automate routine but complex tasks, capture analysis algorithms in understandable and reusable forms, and harness fast networks and powerful cloud computers to process data rapidly, all without sacrificing usability or reproducibility-thus ensuring that big data are not hard-to-(re)use data. We evaluate our approach via a user study, and show that 91% of participants were able to replicate a complex analysis involving considerable data volumes
Identification of Novel and Rare Variants Associated with Handgrip Strength Using Whole Genome Sequence Data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program
Handgrip strength is a widely used measure of muscle strength and a predictor of a range of morbidities including cardiovascular diseases and all-cause mortality. Previous genome-wide association studies of handgrip strength have focused on common variants primarily in persons of European descent. We aimed to identify rare and ancestry-specific genetic variants associated with handgrip strength by conducting whole-genome sequence association analyses using 13,552 participants from six studies representing diverse population groups from the Trans-Omics in Precision Medicine (TOPMed) Program. By leveraging multiple handgrip strength measures performed in study participants over time, we increased our effective sample size by 7-12%. Single-variant analyses identified ten handgrip strength loci among African-Americans: four rare variants, five low-frequency variants, and one common variant. One significant and four suggestive genes were identified associated with handgrip strength when aggregating rare and functional variants; all associations were ancestry-specific. We additionally leveraged the different ancestries available in the UK Biobank to further explore the ancestry-specific association signals from the single-variant association analyses. In conclusion, our study identified 11 new loci associated with handgrip strength with rare and/or ancestry-specific genetic variations, highlighting the added value of whole-genome sequencing in diverse samples. Several of the associations identified using single-variant or aggregate analyses lie in genes with a function relevant to the brain or muscle or were reported to be associated with muscle or age-related traits. Further studies in samples with sequence data and diverse ancestries are needed to confirm these findings
New Science in Plain Sight : Citizen Scientists Lead to Discovery of Optical Structure in the Upper Atmosphere
A glowing ribbon of purple light running east-west in the night sky has recently been observed by citizen scientists. This narrow, subauroral, visible structure, distinct from the traditional auroral oval, was largely undocumented in the scientific literature and little was known about its formation. Amateur photo sequences showed colors distinctly different from common types of aurora and occasionally indicated magnetic field–aligned substructures. Observations from the Swarm satellite as it crossed the arc have revealed an unusual level of electron temperature enhancement and density depletion, along with a strong westward ion flow, indicating that a pronounced subauroral ion drift (SAID) is associated with this structure. These early results suggest the arc is an optical manifestation of SAID, presenting new opportunities for investigation of the dynamic SAID signatures from the ground. On the basis of the measured ion properties and original citizen science name, we propose to identify this arc as a Strong Thermal Emission Velocity Enhancement (STEVE)
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