Long-term aerosol and cloud database from correlative EARLINET-CALIPSO observations

The European Aerosol Research Lidar Network, EARLINET, performs correlative observations during CALIPSO overpasses based on a sophisticated measurement strategy since June 2006. Within a dedicated activity supported by the European Space Agency (ESA), sixteen EARLINET stations contributed about 1500 measurements during an intensive observational period from May 2008 to October 2009. From these measurements, we establish a long-term aerosol and cloud database of correlative EARLINET-CALIPSO observations. This database shall provide a basis for homogenizing long-term space-borne observations conducted with different lidar instruments operating at different wavelengths on various platforms over the next decade(s). The database is also used to study the quality and representativeness of satellite lidar cross sections along an orbit against long-term lidar network observations on a continental scale.Postprint (published version

Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns

Epigenetic processes, including DNA methylation (DNAm), are among the mechanisms allowing integration of genetic and environmental factors to shape cellular function. While many studies have investigated either environmental or genetic contributions to DNAm, few have assessed their integrated effects. Here we examine the relative contributions of prenatal environmental factors and genotype on DNA methylation in neonatal blood at variably methylated regions (VMRs) in 4 independent cohorts (overall n = 2365). We use Akaike’s information criterion to test which factors best explain variability of methylation in the cohort-specific VMRs: several prenatal environmental factors (E), genotypes in cis (G), or their additive (G + E) or interaction (GxE) effects. Genetic and environmental factors in combination best explain DNAm at the majority of VMRs. The CpGs best explained by either G, G + E or GxE are functionally distinct. The enrichment of genetic variants from GxE models in GWAS for complex disorders supports their importance for disease risk

A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers

Breast cancer (BC) risk for BRCA1 and BRCA2 mutation carriers varies by genetic and familial factors. About 50 common variants have been shown to modify BC risk for mutation carriers. All but three, were identified in general population studies. Other mutation carrier-specific susceptibility variants may exist but studies of mutation carriers have so far been underpowered. We conduct a novel case-only genome-wide association study comparing genotype frequencies between 60,212 general population BC cases and 13,007 cases with BRCA1 or BRCA2 mutations. We identify robust novel associations for 2 variants with BC for BRCA1 and 3 for BRCA2 mutation carriers, P < 10−8, at 5 loci, which are not associated with risk in the general population. They include rs60882887 at 11p11.2 where MADD, SP11 and EIF1, genes previously implicated in BC biology, are predicted as potential targets. These findings will contribute towards customising BC polygenic risk scores for BRCA1 and BRCA2 mutation carriers

Comparison of Coastal Fringe and Interior Forests as Reserves for Marbled Murrelets on Vancouver Island

Much of the protected habitat available to the threatened Marbled Murrelet Brachyramphus marmoratus and other old-growth associated species in the Pacific Northwest is in narrow strips along the coast (e.g., parks and scenic fringes). Using data over two years from three watersheds on southwest Vancouver Island, we show that such shoreline strip forests represent suboptimal habitat for murrelets. Murrelet detections, including circling and subcanopy behaviors, were significantly lower at 30 coastal stations (20–250 m from the shoreline edge) than at 30 interior stations (1.5–21.0 km inland). Densities of predators were significantly higher at the coastal stations. The coastal trees were of similar mean height and diameter, but they had lower structural diversity and provided fewer and less suitable (thinner epiphyte cover on large boughs) nesting platforms than trees in the interior. When possible, reserves for Marbled Murrelets should be placed in interior and not shoreline forests

Persistent and transient spectral hole-burning in Pr3+-doped, and Eu3+-doped silicate-glasses

Biological and Soft Matter Physic

Comparison of Coastal Fringe and Interior Forests as Reserves for Marbled Murrelets on Vancouver Island

Much of the protected habitat available to the threatened Marbled Murrelet Brachyramphus marmoratus and other old-growth associated species in the Pacific Northwest is in narrow strips along the coast (e.g., parks and scenic fringes). Using data over two years from three watersheds on southwest Vancouver Island, we show that such shoreline strip forests represent suboptimal habitat for murrelets. Murrelet detections, including circling and subcanopy behaviors, were significantly lower at 30 coastal stations (20–250 m from the shoreline edge) than at 30 interior stations (1.5–21.0 km inland). Densities of predators were significantly higher at the coastal stations. The coastal trees were of similar mean height and diameter, but they had lower structural diversity and provided fewer and less suitable (thinner epiphyte cover on large boughs) nesting platforms than trees in the interior. When possible, reserves for Marbled Murrelets should be placed in interior and not shoreline forests

Effect of nano- and micro-roughness on adhesion of bioinspired micropatterned surfaces

In this work, the adhesion of biomimetic polydimethylsiloxane (PDMS) pillar arrays with mushroom-shaped tips was studied on nano- and micro-rough surfaces and compared to unpatterned controls. The adhesion strength on nano-rough surfaces invariably decreased with increasing roughness, but pillar arrays retained higher adhesion strengths than unpatterned controls in all cases. The results were analyzed with a model that focuses on the effect on adhesion of depressions in a rough surface. The model fits the data very well, suggesting that the pull-off strength for patterned PDMS is controlled by the deepest dimple-like feature on the rough surface. The lower pull-off strength for unpatterned PDMS may be explained by the initiation of the pull-off process at the edge of the probe, where significant stress concentrates. With micro-rough surfaces, pillar arrays showed maximum adhesion with a certain intermediate roughness, while unpatterned controls did not show any measurable adhesion. This effect can be explained by the inability of micropatterned surfaces to conform to very fine and very large surface asperities