Proposal to generate 10 TW level femtosecond x-ray pulses from a baseline undulator in conventional SASE regime at the European XFEL

Output characteristics of the European XFEL have been previously studied assuming an operation point at 5 kA peak current. In this paper we explore the possibility to go well beyond such nominal peak current level. In order to illustrate the potential of the European XFEL accelerator complex we consider a bunch with 0.25 nC charge, compressed up to a peak current of 45 kA. An advantage of operating at such high peak current is the increase of the x-ray output peak power without any modification to the baseline design. Based on start-to-end simulations, we demonstrate that such high peak current, combined with undulator tapering, allows one to achieve up to a 100-fold increase in a peak power in the conventional SASE regime, compared to the nominal mode of operation. In particular, we find that 10 TW-power level, femtosecond x-ray pulses can be generated in the photon energy range between 3 keV and 5 keV, which is optimal for single biomolecule imaging. Our simulations are based on the exploitation of all the 21 cells foreseen for the SASE3 undulator beamline, and indicate that one can achieve diffraction to the desired resolution with 15 mJ (corresponding to about 3e13 photons) in pulses of about 3 fs, in the case of a 100 nm focus at the photon energy of 3.5 keV

Extension of SASE bandwidth up to 2% as a way to increase the efficiency of protein structure determination by x-ray nanocrystallography at the European XFEL

Femtosecond x-ray nanocrystallography exploiting XFEL radiation is an emerging method for protein structure determination using crystals with sizes ranging from a few tens to a few hundreds nanometers. Crystals are randomly hit by XFEL pulses, producing diffraction patterns at unknown orientations. One can determine these orientations by studying the diffraction patterns themselves, i.e. by indexing the Bragg peaks. The number of indexed individual images and the SASE bandwidth are inherently linked, because increasing the number of Bragg peaks per individual image requires increasing the bandwidth of the spectrum. This calls for a few percent SASE bandwidth, resulting in an increase in the number of indexed images at the same number of hits. Based on start-to-end simulations for the baseline of the European XFEL, we demonstrate here that it is possible to achieve up to a tenfold increase in SASE bandwidth, compared with the nominal mode of operation. This provides a route for further increasing the efficiency of protein structure determination at the European XFEL. We illustrate this concept with simulations of lysozyme nanocrystals

Perspectives of Imaging of Single Protein Molecules with the Present Design of the European XFEL. - Part I - X-ray Source, Beamlime Optics and Instrument Simulations

The Single Particles, Clusters and Biomolecules (SPB) instrument at the European XFEL is located behind the SASE1 undulator, and aims to support imaging and structure determination of biological specimen between about 0.1 micrometer and 1 micrometer size. The instrument is designed to work at photon energies from 3 keV up to 16 keV. This wide operation range is a cause for challenges to the focusing optics. In particular, a long propagation distance of about 900 m between x-ray source and sample leads to a large lateral photon beam size at the optics. The beam divergence is the most important parameter for the optical system, and is largest for the lowest photon energies and for the shortest pulse duration (corresponding to the lowest charge). Due to the large divergence of nominal X-ray pulses with duration shorter than 10 fs, one suffers diffraction from mirror aperture, leading to a 100-fold decrease in fluence at photon energies around 4 keV, which are ideal for imaging of single biomolecules. The nominal SASE1 output power is about 50 GW. This is very far from the level required for single biomolecule imaging, even assuming perfect beamline and focusing efficiency. Here we demonstrate that the parameters of the accelerator complex and of the SASE1 undulator offer an opportunity to optimize the SPB beamline for single biomolecule imaging with minimal additional costs and time. Start to end simulations from the electron injector at the beginning of the accelerator complex up to the generation of diffraction data indicate that one can achieve diffraction without diffraction with about 0.5 photons per Shannon pixel at near-atomic resolution with 1e13 photons in a 4 fs pulse at 4 keV photon energy and in a 100 nm focus, corresponding to a fluence of 1e23 ph/cm^2. This result is exemplified using the RNA Pol II molecule as a case study

Adverse Associations between Visceral Adiposity, Brain Structure, and Cognitive Performance in Healthy Elderly

The link between central adiposity and cognition has been established by indirect measures such as body mass index (BMI) or waist–hip ratio. Magnetic resonance imaging (MRI) quantification of central abdominal fat has been linked to elevated risk of cardiovascular and cerebro-vascular disease. However it is not known how quantification of visceral fat correlates with cognitive performance and measures of brain structure. We filled this gap by characterizing the relationships between MRI measures of abdominal adiposity, brain morphometry, and cognition, in healthy elderly. Methods: A total of 184 healthy community dwelling elderly subjects without cognitive impairment participated in this study. Anthropometric and biochemical markers of cardiovascular risk, neuropsychological measurements as well as MRI of the brain and abdomen fat were obtained. Abdominal images were segmented into subcutaneous adipose tissue and visceral adipose tissue (VAT) adipose tissue compartments. Brain MRI measures were analyzed quantitatively to determine total brain volume, hippocampal volume, ventricular volume, and cortical thickness. Results: VAT showed negative association with verbal memory (r = 0.21, p = 0.005) and attention (r = 0.18, p = 0.01). Higher VAT was associated with lower hippocampal volume (F = 5.39, p = 0.02) and larger ventricular volume (F = 6.07, p = 0.02). The participants in the upper quartile of VAT had the lowest hippocampal volume even after adjusting for age, gender, hypertension, and BMI (b = −0.28, p = 0.005). There was a significant age by VAT interaction for cortical thickness in the left prefrontal region. Conclusion: In healthy older adults, elevated VAT is associated with negative effects on cognition, and brain morphometry

RETINAL VESSEL DETECTION USING SELF-MATCHED FILTERING

ABSTRACT Automated analysis of retinal images usually requires estimating the positions of blood vessels, which contain important features for image alignment and abnormality detection. Matched filtering can produce the best results but is difficult to implement because the vessel orientations and widths are unknown beforehand. Many researchers use Hessian filtering, which provides an estimate for vessel orientation through the use of three orientation templates. We propose a novel filtering approach, called self-matched filtering, which is based on the 180 • rotated version of the noisy vessel signal in the local neighborhood. We show that even though the proposed filter achieves half the signal-to-noise ratio of a matched filter, it does not require the estimation of the vessel scale and orientation, and can outperform Hessian filtering by up to a factor of two in terms of miss detection error

New Measure of Insulin Sensitivity Predicts Cardiovascular Disease Better than HOMA Estimated Insulin Resistance

10.1371/journal.pone.0074410PLoS ONE89-POLN

Opportunities for Two-Color Experiments in the Soft X-ray Regime at the European XFEL

X-ray pump/X-ray probe applications are made possible at X-ray Free Electron Laser (XFEL) facilities by generating two X-ray pulses with different wavelengths and controllable temporal delay. In order to enable this capability at the European XFEL, an upgrade project to equip the soft X-ray SASE3 beamline with a magnetic chicane is underway. In the present paper we describe the status of the project, its scientific focus and expected performance, including start-to-end simulations of the photon beam transport up to the sample, as well as recent experimental results demonstrating two-color lasing at photon energies of 805 eV + 835 eV and 910 eV + 950 eV. Additionally, we discuss methods to analyze the spectral properties and the intensity of the generated radiation to provide on-line diagnostics for future user experiments

PERFORMANCE EVALUATION OF PARAMETRIC BIAS FIELD CORRECTION

Magnetic Resonance (MR) images often exhibit grayscale nonuniformities, caused by radio frequency (RF) coil design or acquisition sequences. Many algorithms to remove these nonuniformities have been proposed in the past decade. However, only minor attention has been given to the performance evaluation of existing methods. We derive a link between the estimation performance and underlying image structure. For a piecewise constant 1D signal model with equal size regions we demonstrate that the variance in estimation grows as M 2, where M is the number of regions. In 2D case the growth becomes linear in M. 1