Usage of Morphological Mutations for Improvement of a Garden Pea (Pisum sativum): The Experience of Breeding in Russia

The improvement of pea as a crop over many decades has been employing the use of mutants. Several hundreds of different mutations are known in pea (Pisum sativum subsp. sativum), some of which are valuable for breeding. Breeding strategies may be diverse in different countries depending on different obstacles. In Russia, numerous spontaneous and induced mutations have been implemented in breeding. To our knowledge some of these, are not used in pea breeding beyond Russia. This review describes the use of mutations in pea breeding in Russia. The paper provides examples of cultivars created on the basis of mutations affecting the development of seeds (def), inflorescence (det, deh), compound leaves (af, af unitac), and symbiotic nitrogen fixation (various alleles of Sym and Nod loci). Novel mutations which are potentially promising for breeding are currently being investigated. Together with numerous cultivars of dry and fodder pea carrying commonly known mutations, new ‘chameleon’ and ‘lupinoid’ morphotypes, both double mutants, are under study. A cultivar Triumph which increases the effectiveness of interactions with beneficial soil microbes, was bred in Russia for the first time in the history of legume breeding

Genomic and phenotypic analysis of Vavilov's historic landraces reveals the impact of environment and genomic islands of agronomic traits.

The Vavilov Institute of Plant Genetic Resources (VIR), in St. Petersburg, Russia, houses a unique genebank, with historical collections of landraces. When they were collected, the geographical distribution and genetic diversity of most crops closely reflected their historical patterns of cultivation established over the preceding millennia. We employed a combination of genomics, computational biology and phenotyping to characterize VIR's 147 chickpea accessions from Turkey and Ethiopia, representing chickpea's center of origin and a major location of secondary diversity. Genotyping by sequencing identified 14,059 segregating polymorphisms and genome-wide association studies revealed 28 GWAS hits in potential candidate genes likely to affect traits of agricultural importance. The proportion of polymorphisms shared among accessions is a strong predictor of phenotypic resemblance, and of environmental similarity between historical sampling sites. We found that 20 out of 28 polymorphisms, associated with multiple traits, including days to maturity, plant phenology, and yield-related traits such as pod number, localized to chromosome 4. We hypothesize that selection and introgression via inadvertent hybridization between more and less advanced morphotypes might have resulted in agricultural improvement genes being aggregated to genomic 'agro islands', and in genotype-to-phenotype relationships resembling widespread pleiotropy

Dostignuća u istraživanju na vaviloviji (Vavilovia formosa (Stev.) Fed.), samoniklom srodniku gajenih mahunarki

Vavilovia (Vavilovia formosa (Stev.) Fed.) belongs to the tribe Fabeae along with peas, vetchlings, vetches and lentils. It prefers high mountain areas in Armenia, Azerbaijan, Georgia, Iran, Iraq, Lebanon, Russia, Syria and Turkey. A true success in the ex situ conservation has recently been achieved, within the display plot Flora and Vegetation of Armenia in the Yerevan Botanic Garden. The hybridization between vavilovia and other Fabeae was done in the N. I. Vavilov Institute of Plant Industry with F1 seeds and F1 plants that did not produce the next generation. The recent molecular research showed that vavilovia belongs to a Lathyrus-Pisum-Vavilovia clade with a clearly distinct status.Vavilovija (Vavilovia formosa (Stev.) Fed.) pripada tribusu Fabeae, zajedno sa graškovima, grahorima, grahoricama i sočivima. Vavilovija raste u visokoplaninskim oblastima Jermenije, Azerbejdžana, Gruzije, Iraka, Irana, Libana, Rusije, Sirije i Turske. Pravi uspeh u ex situ konzervaciji postignut je nedavno u okviru izložbenog polja 'Flora i vegetacija Jermenije' u botaničkoj bašti u Jerevanu. Hibridizacija između vavilovije i graška izvršena je u institutu Vavilov, sa F1 semenima i F1 biljkama koje nisu uspele da daju sledeće pokoljenje. Skorašnja molekularna istraživanja pokazala su da vavilovija pripada grupi Lathyrus - Pisum - Vavilovia sa jasno izraženim posebnim statusom

Genome-wide association study in accessions of the mini-core collection of mungbean (Vigna radiata) from the World Vegetable Gene Bank (Taiwan)

Background: Mungbean (Vigna radiata (L.) R. Wilczek, or green gram) is important tropical and sub-tropical legume and a rich source of dietary protein and micronutrients. In this study we employ GWAS to examine the genetic basis of variation in several important traits in mungbean, using the mini-core collection established by the World Vegetable Center, which includes 296 accessions that represent the major market classes. This collection has been grown in a common field plot in southern European part of Russia in 2018. Results: We used 5041 SNPs in 293 accessions that passed strict filtering for genetic diversity, linkage disequilibrium, population structure and GWAS analysis. Polymorphisms were distributed among all chromosomes, but with variable density. Linkage disequilibrium decayed in approximately 105 kb. Four distinct subgroups were identified within 293 accessions with 70% of accessions attributed to one of the four populations. By performing GWAS on the mini-core collection we have found several loci significantly associated with two important agronomical traits. Four SNPs associated with possibility of maturation in Kuban territory of Southern Russia in 2018 were identified within a region of strong linkage which contains genes encoding zinc finger A20 and an AN1 domain stress-associated protein. Conclusions: The core collection of mungbean established by the World Vegetable Center is a valuable resource for mungbean breeding. The collection has been grown in southern European part of Russia in 2018 under incidental stresses caused by abnormally hot weather and different photoperiod. We have found several loci significantly associated with color of hypocotyl and possibility of maturation under these stressful conditions. SNPs associated with possibility of maturation localize to a region on chromosome 2 with strong linkage, in which genes encoding zinc finger A20 and AN1 domain stress associated protein (SAP) are located. Phenotyping of WorldVeg collection for maturation traits in temperate climatic locations is important as phenology remains a critical breeding target for mungbean. As demand rises for mungbean, production in temperate regions with shorter growing seasons becomes crucial to keep up with needs. Uncovering SNPs for phenology traits will speed breeding efforts

Aleksandar Mikić, the legume (re)searcher

Aleksandar Mikić was born in Pančevo, Serbia, on 9 January 1974, and died on 5 September 2021, Novi Sad, Serbia. He received BSc in 1998, MSc in 2008, and PhD in 2014 in Plant Genetics and Breeding at the University of Novi Sad, Faculty of Agriculture. He worked as Research Associate and annual legume breeder at the Institute of Field and Vegetable Crops in Novi Sad, Serbia, from 2000 to 2018. His fields of interest encompassed conventional and molecular genetics, genetic resources, breeding, agronomy, agroecology, and crop history of annual legumes. Dr. Mikić co-authored more than 350 journal papers, about 120 international conference papers, over 10 book chapters and one book. He has also authored more than 30 cultivars of annual legumes and various forage crops registered in Serbia and abroad. Aleksandar's scientific horizons were endless, including archaeobotany, linguistics, plant biology, breeding, and farmers communities

Reports on establishing an ex situ site for ‘beautiful’ vavilovia (Vavilovia formosa) in Armenia

Vavilovia (Vavilovia Fed.) is one of the five genera in tribe Fabeae and consists of only one species, ‘beautiful’ vavilovia (Vavilovia formosa (Stev.) Fed.). The main centre of distribution is the Central and Eastern Caucasus, with a disjunct distribution among high alpine areas in the region, extending as far as West Turkey, Lebanon and Iran. In Armenia, in situ studies on Vavilovia started in the late 1930s. In July and August 2009, three expeditions were conducted to two locations: two to the Ughtasar Mountain and one to the Geghama Mountains. The first expedition to Ughtasar resulted in fresh plant collections and soil analysis for one of the sites. The expedition to Geghama established the existence of Vavilovia in the region of Lake Aknalitch. The second expedition to Ughtasar provided immature fruits and seeds. Collected plant material was transplanted into the Flora and Vegetation of Armenia plot of the Yerevan Botanic Garden established in 1940. Today, along with other plants the plot contains more than 200 species of wild relatives of cultural plants from 130 genera, including indiginous species of tribe Fabeae such as Vavilovia. The transplanted plants will continue to be monitored to see if the plants go on to successfully flower and set seed or whether further sites, possibly at higher altitudes might need to be tested to meet the long term conservation requirements of this iconic legume. These co-ordinated efforts provide a good example of an ex situ conservation strategy for Vavilovia formosa, which, if successful will improve access and utility for the whole legume research community

The bicentenary of the research on 'beautiful' vavilovia (Vavilovia formosa), a legume crop wild relative with taxonomic and agronomic potential

Vavilovia formosa is a relict, endangered species from the highlands of the Caucasus and the Near East. Described in 1812, it has had an uncertain status and was finally recognized as a separate genus of tribe Fabeae (Fabaceae). Our informal international group was established in 2007 to revive the interest in this species as it had been seriously neglected for decades. Here, we provide an overview of the accumulated knowledge on V.formosa and present the results of the most recent multidisciplinary research. Three expeditions were made to two locations in Armenia in 2009, providing the material for anatomical, morphological, chemical and molecular analysis. Unlike previous attempts, ex situ conservation in Yerevan and in vitro propagation, important for potential interspecific hybridization, were successful. Molecular tools were used to clarify the taxonomic position of V.formosa, often considered the closest to the extinct ancestor of the whole tribe. The analysis of four informative regions of plastid and nuclear DNA showed that V.formosa belongs to the same clade as Lathyrus and Pisum, with a distinct status. Preservation and maintenance of V.formosa remains the only basis for further development of all other scientific aspects, especially breeding and uses in agronomy.

Beauty will save the world, but will the world save beauty? The case of highly endangered Vavilovia formosa (Stev.) Fed.

Vavilovia formosa (Stev.) Fed. is a relict, endangered species from the highlands of Caucasus and Near East. It was described in 1812, with often uncertain status and finally recognised as a separate genus of the tribe Fabeae Rchb. Our informal international group was established in 2007 to revive the interest in this species since it had been seriously neglected for decades. This review gives an overview of the accumulated knowledge on V. formosa and presents the results of its most recent multidisciplinary research. Three expeditions were made to two locations in Armenia in 2009, providing the material for anatomical, morphological, chemical and molecular analysis. Unlike previous attempts, ex situ conservation in Yerevan and in vitro propagation, important for potential interspecies hybridisation, are successful. Molecular tools were used to clarify the taxonomical position of V. formosa, often considered the closest to the extinct ancestor of the whole tribe. The analysis of four informative regions of chloroplast and nuclear DNA showed that V. formosa belonged to the same clade with Lathyrus and Pisum and with a distinct status. Preservation and maintenance of V. formosa remains the only basis for further development of all other scientific aspects, especially breeding and uses in agronomy