An optimization strategy for customized radiotherapy head immobilization masks

Este trabalho foi financiado pelo Concurso Anual para Projetos de Investigação, Desenvolvimento, Inovação e Criação Artística (IDI&CA) 2016 do Instituto Politécnico de Lisboa. Código de referência IPL/2016/SoftImob_ISELAn effective head immobilization is an important requirement in radiotherapy treatment sessions, although it may also be thought in the future as a precious aid in brain medical imaging. Thus, the present work is focused on the stiffness optimization of a customized head immobilization mask, modelled upon the head reconstruction surface based on computerized tomography images. This paper proposes a strategy supported by a metaheuristic optimization technique and a metamodeling approach for the whole mask, illustrated at its most unfavorable region occurring in the gnathion region.info:eu-repo/semantics/publishedVersio

Strain and slackness of achilles tendon during passive joint mobilization via imaging ultrasonography

Background: In vivo study of the mechanical behavior of tendons may bring advances in evaluating the impact of intervention programs for flexibility and strength, in clinical practice and sports. Objective: The aim of this study was to quantify the relative strain and slackness of achilles tendons during passive mobilization, for four ankle joint angles and two knee angles. Methods: The displacement of the muscle-tendon junction was quantified by means of ultrasound images acquired during passive ankle mobilization, with the aid of an electrogoniometer and an electromyograph to ensure the achievement of the required angles and muscle inactivity, respectively. Results: The strain values ranged from 4.28%±2.37 to -0.94%±1.58 for the fully extended knee, and from 2.38%±1.63 to -2.32%±2.16% for the flexed knee. Conclusions: The values found in this study confirm those in the literature and demonstrate how the Achilles tendon participates in length changes in the muscle-tendon unit during passive movement. These results suggest that the mechanical properties of tendinous tissues affect the relationship between the length of muscle fibers and the joint angle, even during this type of movement

Correlated disordered interactions on Potts models

Using a weak-disorder scheme and real-space renormalization-group techniques, we obtain analytical results for the critical behavior of various q-state Potts models with correlated disordered exchange interactions along d1 of d spatial dimensions on hierarchical (Migdal-Kadanoff) lattices. Our results indicate qualitative differences between the cases d-d1=1 (for which we find nonphysical random fixed points, suggesting the existence of nonperturbative fixed distributions) and d-d1>1 (for which we do find acceptable perturbartive random fixed points), in agreement with previous numerical calculations by Andelman and Aharony. We also rederive a criterion for relevance of correlated disorder, which generalizes the usual Harris criterion.Comment: 8 pages, 4 figures, to be published in Physical Review

The emergence of the cortisol circadian rhythm in monozygotic and dizygotic twin infants: the twin-pair synchrony

OBJECTIVE: Studies on the influence of genetic factors on the ontogeny of cortisol circadian rhythm in infants are lacking. This study evaluated the influence of twinning and the heritability on the age of emergence of salivary cortisol rhythm. DESIGN AND SUBJECTS: A longitudinal study was performed using salivary samples obtained during morning and night, at 2, 4, 8, 12, 16, 20 and 24 weeks of postnatal life in 34 infants, 10 monozygotic (MZ) and 7 dizygotic (DZ) twin pairs. Salivary cortisol was determined by radioimmunoassay (RIA). Zigosity was verified by DNA analysis of at least 13 short tandem repeat polymorphisms. Difference of the emergence of cortisol circadian rhythm, within each twin pair, the intraclass correlation coefficient and the heritability index (h(2)) were calculated. RESULTS: The mean (± SEM) age of emergence of salivary cortisol circadian rhythm was similar in MZ and DZ (7·8 ± 1·0 vs 7·4 ± 1·3 weeks). Seven pairs showed coincidence of the emergence of cortisol rhythm. Ten pairs were not coincident; among them the within-pair difference of emergence of salivary circadian rhythm was similar in both MZ and DZ groups. The intraclass correlation coefficients were rMZ = 0·60, P = 0·02; and rDZ = 0·65, P = 0·03, respectively. The heritability index (h(2)) was 0·21 (ns). CONCLUSIONS: Salivary circadian rhythm appeared at the same postnatal age in MZ and DZ twin infants. Although several physiological aspects might be involved, the heritability index, obtained in the present study, suggests less genetic than environmental impact on the age of the onset of the cortisol circadian rhythm. Our data also indicated that each twin-pair show synchrony because they probably shared prenatal and postnatal environmental synchronizers

Avalanches in the Weakly Driven Frenkel-Kontorova Model

A damped chain of particles with harmonic nearest-neighbor interactions in a spatially periodic, piecewise harmonic potential (Frenkel-Kontorova model) is studied numerically. One end of the chain is pulled slowly which acts as a weak driving mechanism. The numerical study was performed in the limit of infinitely weak driving. The model exhibits avalanches starting at the pulled end of the chain. The dynamics of the avalanches and their size and strength distributions are studied in detail. The behavior depends on the value of the damping constant. For moderate values a erratic sequence of avalanches of all sizes occurs. The avalanche distributions are power-laws which is a key feature of self-organized criticality (SOC). It will be shown that the system selects a state where perturbations are just able to propagate through the whole system. For strong damping a regular behavior occurs where a sequence of states reappears periodically but shifted by an integer multiple of the period of the external potential. There is a broad transition regime between regular and irregular behavior, which is characterized by multistability between regular and irregular behavior. The avalanches are build up by sound waves and shock waves. Shock waves can turn their direction of propagation, or they can split into two pulses propagating in opposite directions leading to transient spatio-temporal chaos. PACS numbers: 05.70.Ln,05.50.+q,46.10.+zComment: 33 pages (RevTex), 15 Figures (available on request), appears in Phys. Rev.

In silico analysis of cytochrome p450 genes involved in the metabolism of diterpenes in Coffea.

Brazil is the largest world producer and exporter of coffee, being also the second largest consumer market. Among the main goals of coffee breeders, studies aiming the improvement of cup quality and plant tolerance to biotic and abiotic stresses have extreme importance. Beverage nutraceutical properties and plant defense mechanisms are directly linked to diterpenes present in the lipid fraction of coffee beans, such as cafestol (Caf ) and caveol (Cav). Many members of P 450 gene family are involved in plant secondary metabolism, including diterpenes synthesis. In order to depict biochemical and genetic aspects of diterpenes byosinthesis, we did an in silico characterization of p450 gene family in Coffea spp., and we also quantified Caf and Cav in coffee fruit tissues for further gene expression studies involving diterpens metabolism. Using keyword and Blast search, 1396 ESTs related to Cyt p450 were selected from the Brazilian Coffee Genome Project (http://www.lge.ibi. unicamp.br/cafe). After assembling, we observed 157 putative unigenes, distributed in 92 contigs and 65 singlets. The contigs were analyzed using BLAST X versus public sequences databases (GenBank and Harvest Coffea), confirming their identity to 91 Cyt P450 genes. Expression profiles were inferred by electronic Northern blot of all contigs, allowing the selection of 7 candidate genes for transcriptional analysis based in fruit cDNA library expression. Caf and Cav were measured using HPLC in two different fruit developmental stages: 90 DAF (Days After Flowering) vs 120 DAF and in fruits (120 DAF) treated with 2?M methyl Jasmonate (MJ). Fruits at 120 DAF had an increase of 42% in Cav and 19% in Caf levels in relation to 90DAF fruits. MJ treatment resulted in samples with an average increase of 18% of Cav and 35% of Caf. RNAs were extracted from these samples for future transcriptional analyses. This study establish a platform for expression analysis of cyt P450 candidate genes in RNA samples from tissues with contrasting accumulation of Cav and Caf. (Texte intégral

Surveyed common data access policies preferences amongst European Reference Networks

Background: Data sharing amongst existing Rare Disease (RD) registries, even though being a process that presents multiple barriers, would enrich and ease research, as well as facilitate interoperability between the registries themselves. Methods: To understand their preferences on sharing data, we surveyed 24 European Reference Networks (ERNs) from the RD Domain. Results: The answers show that most ERNs are willing to share a set of Common Data Elements for free with authenticated users at an aggregated or pseudonymized level the moment the data is collected. The one exception is the industry sector, to which ERNs prefer to ask for a fee. Objective: Our aim is to create a reference for how most RD registries are willing to share their data, improving the ability of other stakeholders to make informed decisions to make their data interoperable.</p

Surveyed common data access policies preferences amongst European Reference Networks

Background: Data sharing amongst existing Rare Disease (RD) registries, even though being a process that presents multiple barriers, would enrich and ease research, as well as facilitate interoperability between the registries themselves. Methods: To understand their preferences on sharing data, we surveyed 24 European Reference Networks (ERNs) from the RD Domain. Results: The answers show that most ERNs are willing to share a set of Common Data Elements for free with authenticated users at an aggregated or pseudonymized level the moment the data is collected. The one exception is the industry sector, to which ERNs prefer to ask for a fee. Objective: Our aim is to create a reference for how most RD registries are willing to share their data, improving the ability of other stakeholders to make informed decisions to make their data interoperable.</p

Surveyed common data access policies preferences amongst European Reference Networks

Background: Data sharing amongst existing Rare Disease (RD) registries, even though being a process that presents multiple barriers, would enrich and ease research, as well as facilitate interoperability between the registries themselves. Methods: To understand their preferences on sharing data, we surveyed 24 European Reference Networks (ERNs) from the RD Domain. Results: The answers show that most ERNs are willing to share a set of Common Data Elements for free with authenticated users at an aggregated or pseudonymized level the moment the data is collected. The one exception is the industry sector, to which ERNs prefer to ask for a fee. Objective: Our aim is to create a reference for how most RD registries are willing to share their data, improving the ability of other stakeholders to make informed decisions to make their data interoperable.</p