astral_conservative_COS_tree

astral_conservative_COS_tre

100_random_cluster_trees_for_network

Trees for 100 random clusters used to generate network in figure 4

low_copy_cluster_trees_used_for_network

low_copy_cluster_trees_used_for_networ

conservative_COS_concatenated_fasta

fasta file containing concatenated conservative COS loc

chloroplast_all_final

fasta file for chloroplast datase

astral_conservative_COS_tree

astral_conservative_COS_tre

chloroplast_all_tree

chloroplast_all_tre

COS_sequence_length&number_of_sequences

List of COS sequences with alignment length and number of sequences in each alignment

tree file in newick format for the concatenation of all COS loci, as run in Garli

tree file in newick format for the concatenation of all COS loci, as run in Garl

Concatenation_of_all_763_ COS_alignments

Concatenated alignment file