42 research outputs found
Monte-Carlo modeling of the central carbon metabolism of <em>Lactococcus lactis</em>: insights into metabolic regulation
In situ observation of calcium oxide treatment of inclusions in molten steel by confocal microscopy
Calcium treatment of aluminum killed steel was observed in situ using high-temperature confocal scanning laser microscope (HT-CSLM). This technique along with a novel experimental design enables continuous observation of clustering behavior of inclusions before and after the calcium treatment. Results show that the increase in average inclusion size in non-calcium-treated condition was much faster compared to calcium-treated condition. Results also show that the magnitude of attractive capillary force between inclusion particles in non-treated condition was about 10−15 N for larger particles (10 µm) and 10−16 N for smaller particles (5 µm) and acting length of force was about 30 µm. In the case of calcium-treated condition, the magnitude and acting length of force was reduced to 10−16 N and 10 µm, respectively, for particles of all sizes. This change in attractive capillary attractive force is due to change in inclusion morphology from solid alumina disks to liquid lens particles during calcium treatment
Multivariate morphometrics of the Indian honeybee in the northwest Himalayan region
Multivariate statistical analyses of 55 morphometric characters were made for collections of Apis cerana from 20 localities in the Himachal Pradesh and Jammu and Kashmir states of the northwest Himalayas. Two distinct biometric groups were observed after discriminant function analysis and cluster analysis. The groups were associated with differences in the climates of the Himachal and Kashmir regions. Previous observations were confirmed that some characters were associated with altitude and rainfall such that bees were larger and darker at higher altitudes and lower rainfall. The phenetic clustering of samples within each region corresponded in general to physiography. Principal component analysis indicated minimal contributions of general size components to overall covariation in each of the regions
Enzyme kinetics for systems biology when, why and how
In vitro enzymatic assays of cell-free extracts offer an opportunity to assess in vivo enzyme concentrations. If performed under conditions that resemble the conditions in vivo, they may also reveal some of the capacities and properties of the same enzymes in vivo; we shall call this the ex vivo approach. The kinetic characterization of purified enzymes has yet a different utility for systems biology, as does the in vivo determination of enzyme activities. All these approaches are different, and it is becoming important that the appropriate approach be used for the intended purpose. Here, we therefore discuss five approaches to the measurement of enzyme activity in terms of the source of the enzyme activity, the identity of the assay medium, and the purpose of the assay
Quantitative analysis of flux regulation through hierarchical regulation analysis.
Item does not contain fulltextRegulation analysis is a methodology that quantifies to what extent a change in the flux through a metabolic pathway is regulated by either gene expression or metabolism. Two extensions to regulation analysis were developed over the past years: (i) the regulation of V(max) can be dissected into the various levels of the gene-expression cascade, such as transcription, translation, protein degradation, etc. and (ii) a time-dependent version allows following flux regulation when cells adapt to changes in their environment. The methodology of the original form of regulation analysis as well as of the two extensions will be described in detail. In addition, we will show what is needed to apply regulation analysis in practice. Studies in which the different versions of regulation analysis were applied revealed that flux regulation was distributed over various processes and depended on time, enzyme, and condition of interest. In the case of the regulation of glycolysis in baker's yeast, it appeared, however, that cells that remain under respirofermentative conditions during a physiological challenge tend to invoke more gene-expression regulation, while a shift between respirofermentative and respiratory conditions invokes an important contribution of metabolic regulation. The complexity of the regulation observed in these studies raises the question what is the advantage of this highly distributed and condition-dependent flux regulation