Open access and academic associations in the political and social sciences : threat or opportunity?

Academic associations are a vital part of the academic community, facilitating the interaction of researchers and production of knowledge, yet the impact of Open Access on their future has been too often regarded as marginal to the main discussion. Open Access presents an evident threat to those associations which have become dependent upon a sizeable proportion of their income coming from owned journals published in conjunction with publishers. Yet, Open Access also presents opportunities, and academic associations should be bold in using a combination of their expertise, prestige and experience in publishing to ensure their futures in a newly emerging market

Cloudy, increasingly FAIR; Revisiting the FAIR Data guiding principles for the European Open Science Cloud

The FAIR Data Principles propose that all scholarly output should be Findable, Accessible, Interoperable, and Reusable. As a set of guiding principles, expressing only the kinds of behaviours that researchers should expect from contemporary data resources, how the FAIR principles should manifest in reality was largely open to interpretation. As support for the Principles has spread, so has the breadth of these interpretations. In observing this creeping spread of interpretation, several of the original authors felt it was now appropriate to revisit the Principles, to clarify both what FAIRness is, and is not

Tripeptidase Gene (pepT) of Lactococcus lactis:Molecular Cloning and Nucleotide Sequencing of pepT and Construction of a Chromosomal Deletion Mutant

The gene encoding a tripeptidase (pepT) of lactococcus lactis subsp. cremoris (formerly subsp. lactis) MG1363 was cloned from a genomic library in pUC19 and subsequently sequenced. The tripeptidase of L. lactis was shown to be homologous to PepT of Salmonella typhimurium with 47.4% identity in the deduced amino acid sequences. L. lactis PepT was enzymatically active in Escherichia coli and allowed growth of a peptidase-negative leucine-auxotrophic E. coli strain by liberation of Leu from a tripeptide. Using a two-step integration excision system, a pepT-negative mutant of L. lactis was constructed. No differences between the growth of the mutant and that of the wild-type strain in milk or in chemically defined medium with casein as the sole source of essential amino acids were observed.</p

Welcome to Implementation Science

Implementation research is the scientific study of methods to promote the systematic uptake of research findings and other evidence-based practices into routine practice, and, hence, to improve the quality and effectiveness of health services and care. This relatively new field includes the study of influences on healthcare professional and organisational behaviour. Implementation Science will encompass all aspects of research in this field, in clinical, community and policy contexts. This online journal will provide a unique platform for this type of research and will publish a broad range of articles – study protocols, debate, theoretical and conceptual articles, rigorous evaluations of the process of change, and articles on methodology and rigorously developed tools – that will enhance the development and refinement of implementation research. No one discipline, research design, or paradigm will be favoured. Implementation Science looks forward to receiving manuscripts that facilitate the continued development of the field, and contribute to healthcare policy and practice

Introduction of article-processing charges for Population Health Metrics

Population Health Metrics is an open-access online electronic journal published by BioMed Central – it is universally and freely available online to everyone, its authors retain copyright, and it is archived in at least one internationally recognised free repository. To fund this, from November 1 2003, authors of articles accepted for publication will be asked to pay an article-processing charge of US$500. This editorial outlines the reasons for the introduction of article-processing charges and the way in which this policy will work. Waiver requests will be considered on a case-by-case basis, by the Editor-in-Chief. Article-processing charges will not apply to authors whose institutions are 'members' of BioMed Central. Current members include NHS England, the World Health Organization, the US National Institutes of Health, Harvard, Princeton and Yale universities, and all UK universities. No charge is made for articles that are rejected after peer review. Many funding agencies have also realized the importance of open access publishing and have specified that their grants may be used directly to pay APCs

Further characterization of expression of auxin-induced genes in tobacco (Nicotiana tabacum) cell-suspension cultures

Plant science

Tracking anadromous fish over successive freshwater migrations reveals the influence of tagging effect, previous success and abiotic factors on upstream passage over barriers

Predicting and mitigating the impact of anthropogenic barriers on migratory fish requires an understanding of the individual and environmental factors that influence barrier passage. Here, the upstream spawning migrations of iteroparous twaite shad Alosa fallax were investigated over three successive spawning migrations in a highly fragmented river basin using passive acoustic telemetry (n=184). More fish approached and passed barriers in the lower river reaches than further upstream, with the median cumulative weir passage time (IQR) of 4.6 (1.8 - 9.2) days representing 18% of their time in river. Returning fish in their second year had significantly higher weir passage rates than in their tagging year, with passage rates also positively influenced by previous passage success. Higher water temperature and river level also had positive impacts on passage rates. Lower weir passage rates by newly tagged individuals suggests that reliance on within-year passage estimates in telemetry-based barrier impact assessments could result in conservative results, while higher passage rates of previously successful versus unsuccessful individuals suggests a conserved motivation and/or inherent ability to pass barriers

Emigration of post-spawned twaite shad Alosa fallax, an anadromous and iteroparous fish, in a highly fragmented river.

Anthropogenic barriers are widely known to negatively impact the spawning migrations of anadromous fishes, by delaying or preventing passage upstream. Although the impacts of barriers on emigrating post-spawned adults are less well studied, they could potentially impact the fitness and subsequent return rates of iteroparous species. In this study, passive acoustic telemetry was used to track the emigrations of 53 twaite shad Alosa fallax in the River Severn basin in their first spawning migration a year after being tagged, giving insights into their emigration movements and the impacts of anthropogenic weirs on these movements. A. fallax began their emigrations after spending varying amounts of time and migrating various distances within the river, with late-emigrating individuals moving fastest and most directly. Emigrations became faster and more direct the further downstream individuals were from their furthest upstream extent. Downstream passage delays at weirs increased emigration times by a median of 61%, with environmental conditions (i.e., temperature, flow, and tidal influence on river level) having little influence on downstream passage at weirs with no modifications to facilitate fish passage. As weir-induced emigration delays are suggested to deplete energy reserves (when energy levels are already depleted post-spawning), limit spawning opportunities (by preventing access to downstream spawning habitat), and expose individuals to increased predation risk and suboptimal conditions (e.g., high temperatures), these delays can potentially diminish the benefits of iteroparity. The evidence presented here suggests that more consideration should be given to the potential impacts of anthropogenic barriers on the emigrations of iteroparous species when assessing river connectivity or undertaking barrier mitigation

Individual repeatability in the timing of river entry indicates the strong influence of photoperiod in the spawning migrations of iteroparous twaite shad Alosa fallax

The timing of entry into freshwater by mature anadromous fishes is an important component of their migration phenology. In iteroparous anadromous species, identifying the migration cues that influence the timing of entry into freshwater, and annual variability in these timings, is important in assessing the extent of individual repeatability. Here, passive acoustic telemetry tracked 71 twaite shad Alosa fallax (‘shad’) returning to the River Severn’s upper estuary over successive spawning seasons, providing individual information on river entry timing and the associated migration cues. The timing of shad returning to the river (defined as their first detection on an acoustic receiver in the upper estuary) was consistent between years and strongly predicted by photoperiod (as increasing day length), whereas water temperatures and flow rates were weak predictors and highly variable between years. Timings of river entry of individual shad were also consistent across consecutive spawning migrations, indicating high individual repeatability. The application of acoustic telemetry in this study thus revealed high repeatability in the timing of annual spawning migrations, which were cued mainly by increasing day length and that, being seasonally predictable, should ensure entry into freshwater with sufficient time to arrive in spawning areas when in-river environmental conditions are favourable