Graph Data-Models and Semantic Web Technologies in Scholarly Digital Editing

This volume is based on the selected papers presented at the Workshop on Scholarly Digital Editions, Graph Data-Models and Semantic Web Technologies, held at the Uni- versity of Lausanne in June 2019. The Workshop was organized by Elena Spadini (University of Lausanne) and Francesca Tomasi (University of Bologna), and spon- sored by the Swiss National Science Foundation through a Scientific Exchange grant, and by the Centre de recherche sur les lettres romandes of the University of Lausanne. The Workshop comprised two full days of vibrant discussions among the invited speakers, the authors of the selected papers, and other participants.1 The acceptance rate following the open call for papers was around 60%. All authors – both selected and invited speakers – were asked to provide a short paper two months before the Workshop. The authors were then paired up, and each pair exchanged papers. Paired authors prepared questions for one another, which were to be addressed during the talks at the Workshop; in this way, conversations started well before the Workshop itself. After the Workshop, the papers underwent a second round of peer-review before inclusion in this volume. This time, the relevance of the papers was not under discus- sion, but reviewers were asked to appraise specific aspects of each contribution, such as its originality or level of innovation, its methodological accuracy and knowledge of the literature, as well as more formal parameters such as completeness, clarity, and coherence. The bibliography of all of the papers is collected in the public Zotero group library GraphSDE20192, which has been used to generate the reference list for each contribution in this volume. The invited speakers came from a wide range of backgrounds (academic, commer- cial, and research institutions) and represented the different actors involved in the remediation of our cultural heritage in the form of graphs and/or in a semantic web en- vironment. Georg Vogeler (University of Graz) and Ronald Haentjens Dekker (Royal Dutch Academy of Sciences, Humanities Cluster) brought the Digital Humanities research perspective; the work of Hans Cools and Roberta Laura Padlina (University of Basel, National Infrastructure for Editions), as well as of Tobias Schweizer and Sepi- deh Alassi (University of Basel, Digital Humanities Lab), focused on infrastructural challenges and the development of conceptual and software frameworks to support re- searchers’ needs; Michele Pasin’s contribution (Digital Science, Springer Nature) was informed by his experiences in both academic research, and in commercial technology companies that provide services for the scientific community. The Workshop featured not only the papers of the selected authors and of the invited speakers, but also moments of discussion between interested participants. In addition to the common Q&A time, during the second day one entire session was allocated to working groups delving into topics that had emerged during the Workshop. Four working groups were created, with four to seven participants each, and each group presented a short report at the end of the session. Four themes were discussed: enhancing TEI from documents to data; ontologies for the Humanities; tools and infrastructures; and textual criticism. All of these themes are represented in this volume. The Workshop would not have been of such high quality without the support of the members of its scientific committee: Gioele Barabucci, Fabio Ciotti, Claire Clivaz, Marion Rivoal, Greta Franzini, Simon Gabay, Daniel Maggetti, Frederike Neuber, Elena Pierazzo, Davide Picca, Michael Piotrowski, Matteo Romanello, Maïeul Rouquette, Elena Spadini, Francesca Tomasi, Aris Xanthos – and, of course, the support of all the colleagues and administrative staff in Lausanne, who helped the Workshop to become a reality. The final versions of these papers underwent a single-blind peer review process. We want to thank the reviewers: Helena Bermudez Sabel, Arianna Ciula, Marilena Daquino, Richard Hadden, Daniel Jeller, Tiziana Mancinelli, Davide Picca, Michael Piotrowski, Patrick Sahle, Raffaele Viglianti, Joris van Zundert, and others who preferred not to be named personally. Your input enhanced the quality of the volume significantly! It is sad news that Hans Cools passed away during the production of the volume. We are proud to document a recent state of his work and will miss him and his ability to implement the vision of a digital scholarly edition based on graph data-models and semantic web technologies. The production of the volume would not have been possible without the thorough copy-editing and proof reading by Lucy Emmerson and the support of the IDE team, in particular Bernhard Assmann, the TeX-master himself. This volume is sponsored by the University of Bologna and by the University of Lausanne. Bologna, Lausanne, Graz, July 2021 Francesca Tomasi, Elena Spadini, Georg Vogele

Efficacy of Reduced-Intensity Chemotherapy With Oxaliplatin and Capecitabine on Quality of Life and Cancer Control Among Older and Frail Patients With Advanced Gastroesophageal Cancer: The GO2 Phase 3 Randomized Clinical Trial

Importance Older and/or frail patients are underrepresented in landmark cancer trials. Tailored research is needed to address this evidence gap. Objective The GO2 randomized clinical trial sought to optimize chemotherapy dosing in older and/or frail patients with advanced gastroesophageal cancer, and explored baseline geriatric assessment (GA) as a tool for treatment decision-making. Design, Setting, and Participants This multicenter, noninferiority, open-label randomized trial took place at oncology clinics in the United Kingdom with nurse-led geriatric health assessment. Patients were recruited for whom full-dose combination chemotherapy was considered unsuitable because of advanced age and/or frailty. Interventions There were 2 randomizations that were performed: CHEMO-INTENSITY compared oxaliplatin/capecitabine at Level A (oxaliplatin 130 mg/m2 on day 1, capecitabine 625 mg/m2 twice daily on days 1-21, on a 21-day cycle), Level B (doses 0.8 times A), or Level C (doses 0.6 times A). Alternatively, if the patient and clinician agreed the indication for chemotherapy was uncertain, the patient could instead enter CHEMO-BSC, comparing Level C vs best supportive care. Main Outcomes and Measures First, broad noninferiority of the lower doses vs reference (Level A) was assessed using a permissive boundary of 34 days reduction in progression-free survival (PFS) (hazard ratio, HR = 1.34), selected as acceptable by a forum of patients and clinicians. Then, the patient experience was compared using Overall Treatment Utility (OTU), which combines efficacy, toxic effects, quality of life, and patient value/acceptability. For CHEMO-BSC, the main outcome measure was overall survival. Results A total of 514 patients entered CHEMO-INTENSITY, of whom 385 (75%) were men and 299 (58%) were severely frail, with median age 76 years. Noninferior PFS was confirmed for Levels B vs A (HR = 1.09 [95% CI, 0.89-1.32]) and C vs A (HR = 1.10 [95% CI, 0.90-1.33]). Level C produced less toxic effects and better OTU than A or B. No subgroup benefited from higher doses: Level C produced better OTU even in younger or less frail patients. A total of 45 patients entered the CHEMO-BSC randomization: overall survival was nonsignificantly longer with chemotherapy: median 6.1 vs 3.0 months (HR = 0.69 [95% CI, 0.32-1.48], P = .34). In multivariate analysis in 522 patients with all variables available, baseline frailty, quality of life, and neutrophil to lymphocyte ratio were independently associated with OTU, and can be combined in a model to estimate the probability of different outcomes. Conclusions and Relevance This phase 3 randomized clinical trial found that reduced-intensity chemotherapy provided a better patient experience without significantly compromising cancer control and should be considered for older and/or frail patients. Baseline geriatric assessment can help predict the utility of chemotherapy but did not identify a group benefiting from higher-dose treatment. Trial Registration isrctn.org Identifier: ISRCTN4468790

The historic repair and reuse of Byzantine wooden bookboards in the manuscript collection of the monastery of St Catherine, Sinai

This paper discusses the historic repair and reuse of wooden bookboards on Byzantine Greek-style bookbindings in the library of the monastery of St Catherine, Sinai. It is based on a detailed condition survey of the monastery’s manuscripts that also provided a comprehensive description of the materials and structures of these manuscripts. A total of 124 wooden boards with repairs to major splits was found on 101 manuscripts. These repaired boards have been categorised by damage to the boards, information about their repair techniques and materials and the time of repair. Finally it has been possible to compare those manuscripts with repaired boards to the rest of the collection and place the repairs into a wider context of eastern Mediterranean manuscript repair and rebinding. The study of early board repairs offers new approaches to the repair of split wooden bookboards by book conservators

The historic repair and reuse of Byzantine wooden bookboards in the manuscript collection of the monastery of St Catherine, Sinai

This paper discusses the historic repair and reuse of wooden bookboards on Byzantine Greek-style bookbindings in the library of the monastery of St Catherine, Sinai. It is based on a detailed condition survey of the monastery’s manuscripts that also provided a comprehensive description of the materials and structures of these manuscripts. A total of 124 wooden boards with repairs to major splits was found on 101 manuscripts. These repaired boards have been categorised by damage to the boards, information about their repair techniques and materials and the time of repair. Finally it has been possible to compare those manuscripts with repaired boards to the rest of the collection and place the repairs into a wider context of eastern Mediterranean manuscript repair and rebinding. The study of early board repairs offers new approaches to the repair of split wooden bookboards by book conservators

Manuscript boxing: a technique for objective spatial arrangement

Books from historic library collections often require protective boxes which typically increase the required storage space. In some cases, extra storage space is unavailable and therefore good use of existing space is necessary. Deciding on the location of every boxed book on the available shelving is not an easy problem. Calculating the dimensions of the boxes when several hundreds or even thousands of books are considered is again time-consuming. Both of these problems are extremely difficult to solve manually. There are several techniques from the fields of statistics and computer science which can be used to assist with finding a solution. This paper investigates k-means clustering as a way to group books which can fit in a box of a specific size. It also investigates the First Fit Decreasing technique for arranging boxes optimally on shelves. The paper also includes a brief description of the boxes used at the library of the St. Catherine Monastery in Sinai, Egypt,alongside the racking storage system. It describes an application implementing the above techniques for the library’s boxed manuscripts and presents some results confirming the usefulness of the application

Unruly objects: NFTs, blockchain technologies and bio-conservation

This article explores and challenges notions and methodologies of conservation, including the use of blockchain technologies as a means of establishing provenance of a physical BioArtwork, of the artist's documentation encapsulating their intentions and of the conservator's records required for the artwork's ongoing care. The exploration is done through a case study of an art project called 'Unruly Objects and Biological Conservation' created by Anna Dumitriu with support from Alex May. The artwork consists of three items containing RFID tags sealed in resin - which point to the location of the artist's documentation. Therefore, the works physically include instructions for maintaining their inherent concepts and materiality for the benefit of the conservators. Such instructions can often be difficult to track down, or become disassociated from the artwork while the digital preservation of this storage method also poses its own set of questions. The works also include biological material including mud from a bacterial ecosystem known as a Winogradsky Column, living plant material and SARS-CoV-2 (coronavirus) RNA from a plasmid construct. © (2021) 2022 Intellect Ltd

Harmonizing and publishing heterogeneous premodern manuscript metadata as Linked Open Data

Manuscripts are a crucial form of evidence for research into all aspects of premodern European history and culture, and there are numerous databases devoted to describing them in detail. This descriptive information, however, is typically available only in separate data silos based on incompatible data models and user interfaces. As a result, it has been difficult to study manuscripts comprehensively across these various platforms. To address this challenge, a team of manuscript scholars and computer scientists worked to create “Mapping Manuscript Migrations” (MMM), a semantic portal, and a Linked Open Data service. MMM stands as a successful proof of concept for integrating distinct manuscript datasets into a shared platform for research and discovery with the potential for future expansion. This paper will discuss the major products of the MMM project: a unified data model, a repeatable data transformation pipeline, a Linked Open Data knowledge graph, and a Semantic Web portal. It will also examine the crucial importance of an iterative process of multidisciplinary collaboration embedded throughout the project, enabling humanities researchers to shape the development of a digital platform and tools, while also enabling the same researchers to ask more sophisticated and comprehensive research questions of the aggregated data