68 research outputs found

    Chlamydomonas reinhardtii Metabolic Pathway Analysis for Biohydrogen Production under Non-Steady-State Operation

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    This paper presents a novel structured dynamic model to simulate the metabolic reaction network of green algae hydrogen production from aerobic condition to anaerobic condition, which has not been addressed in the open literature to this date. An efficient parameter estimation methodology is proposed to avoid the difficulty of measuring essential kinetic parameters from experiments. The accuracy of the model is verified by comparison to published experimental results. The current model finds that the starch generation pathway mainly competes with hydrogen production pathway, as its activity is enhanced by the cyclic electron flow pathway. From the dynamic sensitivity analysis, it is concluded that the most effective solution to enhance hydrogen production is to seek the optimal sulphur concentration in the culture, rather than to modify the activity of specific enzymes. The current work also denies the previous hypothesis that the diffusion of small proteins in the metabolic network inhibits hydrogen production.This is the accepted manuscript. The final version is available from ACS via http://dx.doi.org/10.1021/acs.iecr.5b0203

    Metabolite biomarker discovery for metabolic diseases by flux analysis

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    Metabolites can serve as biomarkers and their identification has significant importance in the study of biochemical reaction and signalling networks. Incorporating metabolic and gene expression data to reveal biochemical networks is a considerable challenge, which attracts a lot of attention in recent research. In this paper, we propose a promising approach to identify metabolic biomarkers through integrating available biomedical data and disease-specific gene expression data. A Linear Programming (LP) based method is then utilized to determine flux variability intervals, therefore enabling the analysis of significant metabolic reactions. A statistical approach is also presented to uncover these metabolites. The identified metabolites are then verified by comparing with the results in the existing literature. The proposed approach here can also be applied to the discovery of potential novel biomarkers. © 2012 IEEE.published_or_final_versio
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