Towards climate resilience in agriculture for Southeast Asia: an overview for decision-makers.

This sourcebook, and accompanying poster learning series, is aimed at policy makers, planners in government, local research administrators, civil society partners and researchers in Southeast Asia. Compiled and repackaged by Dr. Julian Gonsalves and a resource team, the Climate-Smart Agriculture (CSA) source book draws from a rich pool of literature from over 700 sources. The compilation provides succinct, relevant and timely information about climate challenges, and potential solutions from previously published work in a simplified or a shortened form from around the world. While the focus is on challenges specific to Southeast Asia, solutions may come from, or already have been tested elsewhere; it is for this reason that articles from around the world have been included, to demonstrate that adaptation efforts are already being implemented, and a wide range of approaches and strategies are available. This resource seeks to bridge the gap between what policy makers know, and what research shows can work on the ground to improve adaptation, increase productivity, enhance livelihoods, and contribute to sustainable development affected by climate change. The related poster series can be found here: http://hdl.handle.net/10568/71099

Surveying a Diverse Pool of Microalgae as a Bioresource for Future Biotechnological Applications

Jakob G, Wolf J, Bui TVL, et al. Surveying a Diverse Pool of Microalgae as a Bioresource for Future Biotechnological Applications. Journal of Petroleum & Environmental Biotechnology. 2013;4(05):153.Resource limitation is an escalating concern given human expansion and development. Algae are increasingly recognised as a promising bioresource and the range of cultivated species and their products is expanding. Compared to terrestrial crops, microalgae are very biodiverse and offer considerable versatility for a range of biotechnological applications including the production of animal feeds, fuels, high value products and waste-water treatment. Despite their versatility and capacity for high biomass productivity on non-arable land, attempts to harness microalgae for commercial benefit have been limited. This is in large part due to capital costs and energy inputs remaining high, the necessity of identifying ‘suitable’ land with proximal resource and infrastructure availability and the need for process and strain optimisation. Microalgae represent a relatively unexplored bioresource both for native and engineered strains. Success in this area requires (1) appropriate methods to source and isolate microalgae strains, (2) efficient maintenance of motherstocks, (3) rapid strain characterisation and correct matching of strains to applications, (4) ensuring productive and stable cultivation at scale, and (5) ongoing strain development (breeding, adaptation and engineering). This article illustrates a survey and isolation of over 150 local microalgae strains as a bioresource for ongoing strain development and biotechnological applications

ZEB1 Links p63 and p73 in a Novel Neuronal Survival Pathway Rapidly Induced in Response to Cortical Ischemia

Background: Acute hypoxic/ischemic insults to the forebrain, often resulting in significant cellular loss of the cortical parenchyma, are a major cause of debilitating injury in the industrialized world. A clearer understanding of the pro-death/ pro-survival signaling pathways and their downstream targets is critical to the development of therapeutic interventions to mitigate permanent neurological damage. Methodology/Principal Findings: We demonstrate here that the transcriptional repressor ZEB1, thought to be involved in regulating the timing and spatial boundaries of basic-Helix-Loop-Helix transactivator-mediated neurogenic determination/ differentiation programs, functions to link a pro-survival transcriptional cascade rapidly induced in cortical neurons in response to experimentally induced ischemia. Employing histological, tissue culture, and molecular biological read-outs, we show that this novel pro-survival response, initiated through the rapid induction of p63, is mediated ultimately by the transcriptional repression of a pro-apoptotic isoform of p73 by ZEB1. We show further that this phylogenetically conserved pathway is induced as well in the human cortex subjected to episodes of clinically relevant stroke. Conclusions/Significance: The data presented here provide the first evidence that ZEB1 induction is part of a protective response by neurons to ischemia. The stroke-induced increase in ZEB1 mRNA and protein levels in cortical neurons is both developmentally and phylogenetically conserved and may therefore be part of a fundamental cellular response to thi

PREDIVAC: CD4+T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity

Background: CD4+ T-cell epitopes play a crucial role in eliciting vigorous protective immune responses during peptide (epitope)-based vaccination. The prediction of these epitopes focuses on the peptide binding process by MHC class II proteins. The ability to account for MHC class II polymorphism is critical for epitope-based vaccine design tools, as different allelic variants can have different peptide repertoires. In addition, the specificity of CD4+ T-cells is often directed to a very limited set of immunodominant peptides in pathogen proteins. The ability to predict what epitopes are most likely to dominate an immune response remains a challenge

Evaluation of lymph node numbers for adequate staging of Stage II and III colon cancer

<p>Abstract</p> <p>Background</p> <p>Although evaluation of at least 12 lymph nodes (LNs) is recommended as the minimum number of nodes required for accurate staging of colon cancer patients, there is disagreement on what constitutes an adequate identification of such LNs.</p> <p>Methods</p> <p>To evaluate the minimum number of LNs for adequate staging of Stage II and III colon cancer, 490 patients were categorized into groups based on 1-6, 7-11, 12-19, and ≥ 20 LNs collected.</p> <p>Results</p> <p>For patients with Stage II or III disease, examination of 12 LNs was not significantly associated with recurrence or mortality. For Stage II (HR = 0.33; 95% CI, 0.12-0.91), but not for Stage III patients (HR = 1.59; 95% CI, 0.54-4.64), examination of ≥20 LNs was associated with a reduced risk of recurrence within 2 years. However, examination of ≥20 LNs had a 55% (Stage II, HR = 0.45; 95% CI, 0.23-0.87) and a 31% (Stage III, HR = 0.69; 95% CI, 0.38-1.26) decreased risk of mortality, respectively. For each six additional LNs examined from Stage III patients, there was a 19% increased probability of finding a positive LN (parameter estimate = 0.18510, p < 0.0001). For Stage II and III colon cancers, there was improved survival and a decreased risk of recurrence with an increased number of LNs examined, regardless of the cutoff-points. Examination of ≥7 or ≥12 LNs had similar outcomes, but there were significant outcome benefits at the ≥20 cutoff-point only for Stage II patients. For Stage III patients, examination of 6 additional LNs detected one additional positive LN.</p> <p>Conclusions</p> <p>Thus, the 12 LN cut-off point cannot be supported as requisite in determining adequate staging of colon cancer based on current data. However, a minimum of 6 LNs should be examined for adequate staging of Stage II and III colon cancer patients.</p

The Tumor-Immune Microenvironment and Response to Radiation Therapy

Chemotherapy and radiation therapy (RT) are standard therapeutic modalities for patients with cancer, including breast cancer. Historic studies examining tissue and cellular responses to RT have predominantly focused on damage caused to proliferating malignant cells leading to their death. However, there is increasing evidence that RT also leads to significant alterations in the tumor microenvironment, particularly with respect to effects on immune cells infiltrating tumors. This review focuses on tumor-associated immune cell responses following RT and discusses how immune responses may be modified to enhance durability and efficacy of RT

Complete genome characterization of two wild-type measles viruses from Vietnamese infants during the 2014 outbreak

A large measles virus outbreak occurred across Vietnam in 2014. We identified and obtained complete measles virus genomes in stool samples collected from two diarrheal pediatric patients in Dong Thap Province. These are the first complete genome sequences of circulating measles viruses in Vietnam during the 2014 measles outbreak

Genome sequences of a novel Vietnamese bat bunyavirus

To document the viral zoonotic risks in Vietnam, fecal samples were systematically collected from a number of mammals in southern Vietnam and subjected to agnostic deep sequencing. We describe here novel Vietnamese bunyavirus sequences detected in bat feces. The complete L and S segments from 14 viruses were determined

PRODUCTION AND PROPERTIES OF RECOMBINANT C3-TYPE PHOSPHOENOLPYRUVATE CARBOXYLASE FROM SORGHUM-VULGARE - IN-VITRO PHOSPHORYLATION BY LEAF AND ROOT PYRPC PROTEIN-SERINE KINASES

In this work, the C3-type form of Sorghum phosphoenolpyruvate carboxylase (PyrPC) was produced in PyrPC-deficient strains of Escherichia coli transformed by a plasmid bearing the corresponding full-length cDNA (CPR1). The full-sized protein was purified to homogeneity by immunoaffinity chromatography. Some functional and regulatory properties were described; notably, the immunopurified PyrPC could be phosphorylated in reconstituted assay by 1) both a mammalian PKA and the PyrPC protein serine kinase purified from Sorghum leaves and 2) a novel protein kinase affinity-purified from Sorghum roots. In all cases phosphorylation was accompanied by a marked reduction in its malate sensitivity

Thermal neutron cross-section and resonance integral of the Mo-98(n,gamma)Mo-99 reaction

We measured the thermal neutron cross-section and the resonance integral of the Mo-98(n,gamma)(99) Mo reaction by the activation method using a Au-197(n,gamma)Au-198 monitor reaction as a single comparator. The high-purity natural Mo and Au metallic foils with and without a cadmium shield case of 0.5 mm thickness were irradiated in a neutron field of the Pohang neutron facility. The induced activities in the activated foils were measured with a calibrated p-type high-purity Ge detector. The necessary correction factors for the gamma-ray attenuation (F-g), the thermal neutron self-shielding (G(th)) and the resonance neutron self-shielding (G(epi)) effects, and the epithermal neutron spectrum shape factor (alpha) were taken into account. In addition, for the Mo-99 activity measurements, the correction for true coincidence summing effects was also taken into account. The thermal neutron cross-section for the Mo-98(n,gamma)Mo-99 reaction has been determined to be 0.136 +/- 0.007 barn, relative to the reference value of 98.65 +/- 0.09 barn for the Au-197(n,gamma)(198) Au reaction. The present result is, in general, in good agreement with most of the experimental data and the recently evaluated values of ENDF/B-VII.0, JENDL-3.3, and JEF-2.2 by 5.1% (1 sigma). By assuming the cadmium cut-off energy of 0.55 eV, the resonance integral for the Mo-98(n,gamma)Mo-99 reaction is 7.02 +/- 0.62 barn, which is determined relative to the reference values of 1550 +/- 28 barn for the Au-197(n,gamma)Au-198 reaction. The present resonance integral value is in general good agreement with the previously reported data by 8.8% (1 sigma). (C) 2008 Elsevier B.V. All rights reserved.X116sciescopu