Tetraploid Wheat Landraces in the Mediterranean Basin: Taxonomy, Evolution and Genetic Diversity

The geographic distribution of genetic diversity and the population structure of tetraploid wheat landraces in the Mediterranean basin has received relatively little attention. This is complicated by the lack of consensus concerning the taxonomy of tetraploid wheats and by unresolved questions regarding the domestication and spread of naked wheats. These knowledge gaps hinder crop diversity conservation efforts and plant breeding programmes. We investigated genetic diversity and population structure in tetraploid wheats (wild emmer, emmer, rivet and durum) using nuclear and chloroplast simple sequence repeats, functional variations and insertion site-based polymorphisms. Emmer and wild emmer constitute a genetically distinct population from durum and rivet, the latter seeming to share a common gene pool. Our population structure and genetic diversity data suggest a dynamic history of introduction and extinction of genotypes in the Mediterranean fields

Combinatorial hydrogel library enables identification of materials that mitigate the foreign body response in primates

The foreign body response is an immune-mediated reaction that can lead to the failure of implanted medical devices and discomfort for the recipient. There is a critical need for biomaterials that overcome this key challenge in the development of medical devices. Here we use a combinatorial approach for covalent chemical modification to generate a large library of variants of one of the most widely used hydrogel biomaterials, alginate. We evaluated the materials in vivo and identified three triazole-containing analogs that substantially reduce foreign body reactions in both rodents and, for at least 6 months, in non-human primates. The distribution of the triazole modification creates a unique hydrogel surface that inhibits recognition by macrophages and fibrous deposition. In addition to the utility of the compounds reported here, our approach may enable the discovery of other materials that mitigate the foreign body response.Leona M. and Harry B. Helmsley Charitable Trust (3-SRA-2014-285-M-R)United States. National Institutes of Health (EB000244)United States. National Institutes of Health (EB000351)United States. National Institutes of Health (DE013023)United States. National Institutes of Health (CA151884)United States. National Institutes of Health (P41EB015871-27)National Cancer Institute (U.S.) (P30-CA14051

Optimization of the piggyBac Transposon Using mRNA and Insulators: Toward a More Reliable Gene Delivery System.

Integrating and expressing stably a transgene into the cellular genome remain major challenges for gene-based therapies and for bioproduction purposes. While transposon vectors mediate efficient transgene integration, expression may be limited by epigenetic silencing, and persistent transposase expression may mediate multiple transposition cycles. Here, we evaluated the delivery of the piggyBac transposase messenger RNA combined with genetically insulated transposons to isolate the transgene from neighboring regulatory elements and stabilize expression. A comparison of piggyBac transposase expression from messenger RNA and DNA vectors was carried out in terms of expression levels, transposition efficiency, transgene expression and genotoxic effects, in order to calibrate and secure the transposition-based delivery system. Messenger RNA reduced the persistence of the transposase to a narrow window, thus decreasing side effects such as superfluous genomic DNA cleavage. Both the CTF/NF1 and the D4Z4 insulators were found to mediate more efficient expression from a few transposition events. We conclude that the use of engineered piggyBac transposase mRNA and insulated transposons offer promising ways of improving the quality of the integration process and sustaining the expression of transposon vectors

The El Galeno and Michiquillay porphyry Cu–Au–Mo deposits: geological descriptions and comparison of Miocene porphyry systems in the Cajamarca district, northern Peru

El Galeno and Michiquillay are early to middle Miocene Cu–Au–Mo porphyry-related deposits located in the auriferous Cajamarca district of northern Peru. The El Galeno deposit (486 Mt at 0.57% Cu, 0.14 g/t Au and 150 ppm Mo) is associated with multiple dioritic intrusions hosted within Lower Cretaceous quartzites and shales. Emplacement of the porphyry stocks (17.5–16.5 Ma) in a hanging wall anticline was structurally controlled by oblique faults superimposed on early WNW-trending fold-thrust structures. Early K-feldspar–biotite–magnetite (potassic) alteration was associated with pyrite and chalcopyrite mineralisation. A quartz–magnetite assemblage that occurs at depth has completely replaced potassically altered rocks. Late- and post-mineralisation stocks are spatially and temporally related to weak quartz–muscovite (phyllic) alteration. High Au grades are associated with early intrusive phases located near the centre of the deposit. Highest Cu grades (~0.9% Cu) are mostly associated with a supergene enrichment blanket, whilst high Mo grades are restricted to contacts with the metasedimentary rocks. The Michiquillay Cu–Au–Mo deposit (631 Mt at 0.69% Cu, 0.15 g/t Au, 100–200 ppm Mo) is associated with a Miocene (20.0–19.8 Ma) dioritic complex that was emplaced within the hanging wall of a back thrust fault. The intrusive complex is hosted in quartzites and limestones. The NE-trending deposit is crosscut by NNW-trending prospect-scale faults that influenced both alteration and metal distribution. In the SW and NE of the deposit, potassic alteration zones contain moderate hypogene grades (0.14 g/t Au and 0.8% Cu) and are characterised by chalcopyrite and pyrite mineralisation. The core of the deposit is defined by a lower grade (0.08 g/t Au and 0.57% Cu) phyllic alteration that overprinted early potassic alteration. Michiquillay contains a supergene enrichment blanket of 45–80 m thickness with an average Cu grade of 1.15%, which is overlain by a deep leached cap (up to 150 m). Cu–Au–Mo (El Galeno-Michiquillay) and Au-rich (Minas Conga) deposits in the Cajamarca region are of similar age (early–middle Miocene) and intrusive rock type (dioritic) associations. Despite these geochronological and geochemical similarities, findings from this study suggest variation in metal grade between the hybrid-type and Au-rich deposits result from a combination of physio-chemical factors. These include variations in temperature and oxygen fugacity conditions during hypogene mineralisation resulting in varied sulphide assemblages, host rock type, precipitation of ubiquitous hydrothermal magnetite, and late hydrothermal fluid flow resulting in a well-developed phyllic alteration zone

A computational model for cell/ECM growth on 3D surfaces using the level set method: a bone tissue engineering case study

Three dimensional (3D) open porous scaffolds are commonly used in tissue engineering (TE) applications to provide an initial template for cell attachment and subsequent cell growth and construct development. The macroscopic geometry of the scaffold is key in determining the kinetics of cell growth and thus in vitro ‘tissue’ formation. In this study we developed a computational framework based on the level set methodology to predict curvature-dependent growth of the cell/extracellular matrix domain within TE constructs. Scaffolds with various geometries (hexagonal, square, triangular) and pore sizes (500 and 1000 µm) were produced in house by additive manufacturing, seeded with human periosteum-derived cells and cultured under static conditions for 14 days. Using the projected tissue area as an output measure, the comparison between the experimental and the numerical results demonstrated a good qualitative and quantitative behavior of the framework. The model in its current form is able to provide important spatio-temporal information on final shape and speed of pore-filling of tissue engineered constructs by cells and extracellular matrix during static culture