OPTIMIZATION OF COMPUTATIONAL BURDEN OF THE POINT INFORMATION GAIN

We developed a method of image preprocessing based on the information entropy, namely, on the information contribution made by each individual pixel to the whole image or to image’s part (i.e., a Point Information Gain; PIG). An idea of the PIG calculation is that an image background remains informatively poor, whereas objects carry relevant information. In one calculation, this method preserves details, highlights edges, and decreases random noise. This paper describes optimization and implementation of the PIG calculation on graphical processing units (GPU) to overcome a high computational burden

OPTIMIZATION OF COMPUTATIONAL BURDEN OF THE POINT INFORMATION GAIN

We developed a method of image preprocessing based on the information entropy, namely, on the information contribution made by each individual pixel to the whole image or to image’s part (i.e., a Point Information Gain; PIG). An idea of the PIG calculation is that an image background remains informatively poor, whereas objects carry relevant information. In one calculation, this method preserves details, highlights edges, and decreases random noise. This paper describes optimization and implementation of the PIG calculation on graphical processing units (GPU) to overcome a high computational burden

Neutrophils in chronic lymphocytic leukemia are permanently activated and have functional defects

A growing body of studies highlights involvement of neutrophils in cancer development and progression. Our aim was to assess the phenotypic and functional properties of circulating neutrophils from patients with chronic lymphocytic leukemia (CLL). The percentage of CD54+ and CD64+ neutrophils as well as CD54 expression on these cells were higher in CLL patients than in age-matched healthy controls. Neutrophils from CLL produced more reactive oxygen species (ROS) compared to controls in both resting and activated conditions. Lipopolysaccharide-induced production of IL-1 beta and TNF-a as well as reduced TLR2 expression in neutrophils from CLL than in neutrophils from controls suggesting their tolerant state. Finally, phenotypic alterations of neutrophils, particularly elevation of CD64 and CD54 markers, correlated with disease activity and treatment, and low percentage of neutrophils. Taken together, the alterations in percentage and functional characteristics of neutrophils reflect the clinical course of CLL. Our data provide first evidence that neutrophils in CLL are permanently primed and have functional defects.Web of Science849849018488

High CXCR3 on leukemic cells distinguishes IgHV(mut) from IgHV(unmut) in chronic lymphocytic leukemia: Evidence from CD5(high) and CD5(low) clones

Despite the shared pattern of surface antigens, neoplastic cells in chronic lymphocytic leukemia (CLL) are highly heterogeneous in CD5 expression, a marker linked to a proliferative pool of neoplastic cells. To further characterize CD5(high) and CD5(low) neoplastic cells, we assessed the chemokine receptors (CCR5, CCR7, CCR10, CXCR3, CXCR4, CXCR5) and adhesion molecules (CD54, CD62L, CD49d) on the CD5(high)and CD5(low) subpopulations, defined by CD5/CD19 coexpression, in peripheral blood of CLL patients (n=60) subgrouped according to the IgHV mutational status (IgHV(mut),n=24;IgHV(unmut),n=36). CD5(high) subpopulation showed a high percentage of CXCR3 (P<0.001), CCR10 (P=0.001), and CD62L (P=0.031) and high levels of CXCR5 (P=0.005), CCR7 (P=0.013) compared to CD5(low) cells expressing high CXCR4 (P<0.001). Comparing IgHV(mut) and IgHV(unmut)patients, high levels of CXCR3 on CD5(high) and CD5(low) subpopulations were detected in theIgHV(mut) patients, with better discrimination in CD5(low) subpopulation. Levels of CXCR3 on CD5(low) subpopulation were associated with time to the next treatment, thus further confirming its prognostic value. Taken together, our analysis revealed higher CXCR3 expression on both CD5(high) and CD5(low) neoplastic cells inIgHV(mut) with a better prognosis compared to IgHV(unmut) patients. Contribution of CXCR3 to CLL pathophysiology and its suitability for prognostication and therapeutic exploitation deserves future investigations.Web of Science2020art. no. 708426

Deciphering the complex circulating immune cell microenvironment in chronic lymphocytic leukaemia using patient similarity networks

The tissue microenvironment in chronic lymphocytic leukaemia (CLL) plays a key role in the pathogenesis of CLL, but the complex blood microenvironment in CLL has not yet been fully characterised. Therefore, immunophenotyping of circulating immune cells in 244 CLL patients and 52 healthy controls was performed using flow cytometry and analysed by multivariate Patient Similarity Networks (PSNs). Our study revealed high inter-individual heterogeneity in the distribution and activation of bystander immune cells in CLL, depending on the bulk of the CLL cells. High CLL counts were associated with low activation on circulating monocytes and T cells and vice versa. The highest activation of immune cells, particularly of intermediate and non-classical monocytes, was evident in patients treated with novel agents. PSNs revealed a low activation of immune cells in CLL progression, irrespective of IgHV status, Binet stage and TP53 disruption. Patients with high intermediate monocytes (>5.4%) with low activation were 2.5 times more likely (95% confidence interval 1.421-4.403, P=0.002) to had shorter time-to-treatment than those with low monocyte counts. Our study demonstrated the association between the activation of circulating immune cells and the bulk of CLL cells. The highest activation of bystander immune cells was detected in patients with slow disease course and in those treated with novel agents. The subset of intermediate monocytes showed predictive value for time-to-treatment in CLL.Web of Science111art. no. 32

Optimalizace materiálových toků zřízením logistického centra v podniku Gumárny Zubří, a.s.

Import 12/12/2007Prezenční634 - Katedra ekonomiky a managementu v metalurgiiNeuveden

Analysis of problematic places during the production of cartons

Import 01/09/2009Prezenční634 - Katedra ekonomiky a managementu v metalurgiivelmi dobř

Varieties of Lettuce Forming Distinct Microbial Communities Inhabiting Roots and Rhizospheres with Various Responses to Osmotic Stress

A plant microbiome is an important factor in plant growth, stress resistance, health status, and consumer quality and safety. The rhizosphere microbiome evolves in a negotiation between microbial communities that inhabit soil and plant root tissue. In this study, the rhizosphere and root internal tissue microbiome of six varieties of lettuce were analyzed in normal conditions and under salinity stress. The metabarcoding analysis used 16S rRNA gene and ITS2 region sequencing. The microbiomes of root samples were significantly less diverse with different members of the community compared to those of the rhizosphere. A significant effect of lettuce variety was found on the diversity index for bacteria and fungi. Varieties formed very different communities of bacteria in roots. Pseudomonas, Herbaspirillum, Mycobacterium, potentially pathogenic Enterobacter, and other genera were more prevalent in certain varieties. Salinity stress had a significant negative impact on bacterial diversity and community composition, whereas the diversity of fungi has not changed significantly, and the fungal community has changed less than the bacterial one. Changes were more evident in varieties that were more resistant to salinity stress than in sensitive varieties

Varieties of Lettuce Forming Distinct Microbial Communities Inhabiting Roots and Rhizospheres with Various Responses to Osmotic Stress

A plant microbiome is an important factor in plant growth, stress resistance, health status, and consumer quality and safety. The rhizosphere microbiome evolves in a negotiation between microbial communities that inhabit soil and plant root tissue. In this study, the rhizosphere and root internal tissue microbiome of six varieties of lettuce were analyzed in normal conditions and under salinity stress. The metabarcoding analysis used 16S rRNA gene and ITS2 region sequencing. The microbiomes of root samples were significantly less diverse with different members of the community compared to those of the rhizosphere. A significant effect of lettuce variety was found on the diversity index for bacteria and fungi. Varieties formed very different communities of bacteria in roots. Pseudomonas, Herbaspirillum, Mycobacterium, potentially pathogenic Enterobacter, and other genera were more prevalent in certain varieties. Salinity stress had a significant negative impact on bacterial diversity and community composition, whereas the diversity of fungi has not changed significantly, and the fungal community has changed less than the bacterial one. Changes were more evident in varieties that were more resistant to salinity stress than in sensitive varieties