28 research outputs found
Ambient conditions disordered-ordered phase transition of two-dimensional interfacial water molecules dependent on charge dipole moment
Phase transitions of water molecules are commonly expected to occur only under extreme conditions, such as nanoconfinement, high pressure, or low temperature. We herein report the disordered-ordered phase transition of two-dimensional interfacial water molecules under ambient conditions using molecular-dynamics simulations. This phase transition is greatly dependent on the charge dipole moment, production of both charge values, and the dipole length of the solid surface. The phase transition can be identified by a sharp change in water-water interaction energies and the order parameters of the two-dimensional interfacial water monolayer, under a tiny dipole moment change near the critical dipole moment. The critical dipole moment of the solid material surface can classify a series of materials that can induce distinct ordered phases of surface water, which may also result in surface wetting, friction, and other properties
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Self-assembled micellar structures of Lipopeptides with variable number of attached lipid chains revealed by atomistic molecular dynamics simulations
We present atomistic molecular dynamics simulation study of the self-assembly behavior of toll-like agonist lipopeptides (PamnCSK4) in aqueous solutions. The variable number of hexadecyl lipid chains (n = 1, 2, 3) per molecule has been experimentally suggested to have remarkable influence on their self-assembled nanostructures. Starting from pre-assembled spherical or bilayer configurations, the aggregates of lipopeptides, PamCSK4 and Pam2CSK4, which contain peptide sequences CSK4 linked to either mono- or di-lipid chains (Pam), evolve into spherical-like micelles within 30 ns, whereas the self-assembled structure of tri-lipidated lipopeptides, Pam3CSK4, relaxes much slower and reaches an equilibrium state of flattened wormlike micelle with a bilayer packing structure. The geometric shapes and sizes, namely the gyration radii of spherical micelles and thickness of the flattened wormlike micelle, are found to be in good agreement with experimental measurements, which effectively validates the simulation models and employed force fields. Detailed analyses of molecular packing reveal that these self-assembled nanostructures all consist of a hydrophobic core constructed by lipid chains, a transitional layer and a hydrophilic interfacial layer composed of peptide sequences. The average area per peptide head at the interfaces is found to be nearly constant for all micellar structures studied. The packing parameter of the lipopeptide molecules thus increases with the increase of the number of linked lipid chains, giving rise to the distinct micellar shape transition from spherical-like to flattened wormlike geometry with bilayer stacking, which is qualitatively different from the shape transitions of surfactant micelles induced by variation of concentration or salt type. To facilitate the close-packing of the lipid chains in the hydrophobic core, the lipopeptide molecules typically take the bent conformation with average tilt angles between the peptide sequences and the lipid chains ranging from 110° to 140°. This consequently affects the orientation angles of the lipid chains with respect to the radial or normal direction of the spherical-like or flattened wormlike micelles. In addition, the secondary structures of the peptides may also be altered by the number of lipid chains they are linked to and the resultant micellar structures. Our simulation results on the microscopic structural features of the lipopeptide nanostructures may provide potential insights into their bioactivities and contribute to the design of bioactive medicines or drug carriers. The force fields built for these lipopeptides and the geometric packing discussions could also be adopted for simulating and understanding the self-assembly behavior of other bioactive amiphiphiles with similar chemical compositions
Locally Spontaneous Dynamic Oxygen Migration on Biphenylene: A DFT Study
The dynamic oxygen migration on the interface of carbon materials, such as
graphene and carbon nanotube, has opened up a new avenue to realizing the
dynamic covalent materials. However, the understanding of dynamic behaviors of
oxygen groups on the non-honeycomb structure, such as the biphenylene sheet, is
still limited. Using both density functional theory calculations and ab initio
molecular dynamics simulations, we demonstrate that the oxygen groups on the
biphenylene, which is an allotrope of graphene and composed of four-, six- and
eight-membered rings with unequal C-C bonds, can exhibit locally spontaneous
dynamic oxygen migration through the breaking/reforming of the C-O bond. The
density of state analyses show that the p-band center of the oxygen atom is
closer to the Fermi energy level on biphenylene, compared to that of the oxygen
atom adsorbed on graphene. This contrast confirms the locally spontaneous
dynamic activity of the oxygen atom on biphenylene. This work provides
scientific guidance for the exploration of the locally/globally spontaneous
dynamic covalent materials and adds a new member to the 2D dynamic covalent
material family.Comment: 13 pages, 4 figure
Asymmetric nanoparticle may go “active” at room temperature
Using molecular dynamics simulations, we show that an asymmetrically shaped nanoparticle in dilute solution possesses a spontaneously curved trajectory within a finite time interval, instead of the generally expected random walk. This unexpected dynamic behavior has a similarity to that of active matters, such as swimming bacteria, cells, or even fish, but is of a different physical origin. The key to the curved trajectory lies in the non-zero resultant force originated from the imbalance of the collision forces acted by surrounding solvent molecules on the asymmetrically shaped nanoparticle during its orientation regulation.
Theoretical formulae based on microscopic observations have been derived to describe this non-zero force and the resulting motion of the asymmetrically shaped nanoparticle
Oxygen dissociation on the C3N monolayer: A first-principles study
The oxygen dissociation and the oxidized structure on the pristine C3N
monolayer in exposure to air are the inevitably critical issues for the C3N
engineering and surface functionalization yet have not been revealed in detail.
Using the first-principles calculations, we have systematically investigated
the possible O2 adsorption sites, various O2 dissociation pathways and the
oxidized structures. It is demonstrated that the pristine C3N monolayer shows
more O2 physisorption sites and exhibits stronger O2 adsorption than the
pristine graphene. Among various dissociation pathways, the most preferable one
is a two-step process involving an intermediate state with the chemisorbed O2
and the barrier is lower than that on the pristine graphene, indicating that
the pristine C3N monolayer is more susceptible to oxidation than the pristine
graphene. Furthermore, we found that the most stable oxidized structure is not
produced by the most preferable dissociation pathway but generated from a
direct dissociation process. These results can be generalized into a wide range
of temperatures and pressures using ab initio atomistic thermodynamics. Our
findings deepen the understanding of the chemical stability of 2D crystalline
carbon nitrides under ambient conditions, and could provide insights into the
tailoring of the surface chemical structures via doping and oxidation.Comment: 23 pages,8 figure