Poirierite, a dense metastable polymorph of magnesium iron silicate in shocked meteorites

宇宙から飛来した隕石から新鉱物ポワリエライトを発見 --小天体の衝突過程、地球内部の変化等を探る重要な鍵に--. 京都大学プレスリリース. 2021-01-25.A dense magnesium iron silicate polymorph with a structure intermediate between olivine, ringwoodite, and wadsleyite was theoretically predicted about four decades ago. As this group of minerals constitute the major component of shocked meteorites, constraining their transitional forms and behaviour is of potential importance for understanding impact events on their parent bodies. Here we use high-resolution transmission electron microscopy techniques and single-crystal X-ray diffraction analyses to identify naturally occurring examples of this mineral – recently named poirierite – in shocked chondritic meteorites. We observe nanoscale lamellar poirierite topotactically intergrown within wadsleyite, and additionally within ringwoodite as recently reported. Our results confirm the intermediate structure of poirierite and suggest it might be a relay point in the shear transformations between its polymorphs. We propose that poirierite formed during rapid decompression at relatively low temperature in retrograde shock metamorphism of the meteorites

Protein Free Energy Corrections in ONIOM QM:MM Modeling : A Case Study for Isopenicillin N Synthase (IPNS)

The protein environment can have significant effects on the enzyme catalysis even though the reaction occurs locally at the reaction center. In this paper, we describe an efficient scheme that includes a classical molecular dynamics (MD) free-energy perturbation (FEP) correction to the reaction energy diagram, as a complement to the protein effect obtained from static ONIOM (QM:MM) calculations. The method is applied to eight different reaction steps, from the O2-bound reactant to formation of a high-valent ferryl-oxo intermediate, in the nonheme iron enzyme isopenicillin N synthase (IPNS), for which the QM:MM energy diagram has previously been computed [ Lundberg, M. et al. J. Chem. Theory Comput. 2009, 5, 220 ‚àí 234 ]. This large span of the reaction coordinate is covered by dividing each reaction step into microsteps using a virtual reaction coordinate, thus only requiring ONIOM information about the stationary points themselves. Protein effects are important for C‚àíH bond activation and heterolytic O‚àíO bond cleavage because both these two steps involve charge transfer, and compared to a static QM:MM energies, the dynamics of the protein environment changes the barrier for O‚àíO bond cleavage by several kcal/mol. The origin of the dynamical contribution is analyzed in two terms, the geometrical effect caused by the change in average protein geometry (compared to the optimized geometry) in the room temperature MD simulation with the solvent, and the statistical (entropic) effect resulting from fluctuations in the interactions between the active site and the protein environment. These two effects give significant contributions in different steps of the reaction