Additional file 1: of Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists

Supplementary Figures S1, S2, and S3. (PDF 307 kb

HawaiianTaro_SNP.vcf

Zip archive of eight SNP datasets in VCF format, obtained by four SNP calling methods: GBS+RAD, GBS subset, transcriptome, and UNEAK (see Materials and methods). Each was filtered by minor allele count ≥ 2 (mac2) and minor allele frequency ≥ 0.1 (maf10). The primary dataset was based on GBS+RAD and mac2

HawaiianTaro_SNP.fas

ZIP archive of two SNP datasets used for phylogenetic analyses in FASTA format, homozygous positions only (nomenclature see VCF files)