Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection-2

Norwegian coastal cod north (NCC-N), and Norwegian coastal cod south (NCC-S)). Blue columns = outlier loci according to the Beaumont and Nichols [29] test (Figure 4); red columns = non-outlier SNPs with values significantly different from zero; green columns = SNPs with values not significantly different from zero.<p><b>Copyright information:</b></p><p>Taken from "Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection"</p><p>http://www.biomedcentral.com/1471-2156/9/18</p><p>BMC Genetics 2008;9():18-18.</p><p>Published online 26 Feb 2008</p><p>PMCID:PMC2288615.</p><p></p

Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection-3

Nder a neutral model. SNPs that had values above the 0.975 quantile were considered outlier loci.<p><b>Copyright information:</b></p><p>Taken from "Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection"</p><p>http://www.biomedcentral.com/1471-2156/9/18</p><p>BMC Genetics 2008;9():18-18.</p><p>Published online 26 Feb 2008</p><p>PMCID:PMC2288615.</p><p></p

Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection-1

<p><b>Copyright information:</b></p><p>Taken from "Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection"</p><p>http://www.biomedcentral.com/1471-2156/9/18</p><p>BMC Genetics 2008;9():18-18.</p><p>Published online 26 Feb 2008</p><p>PMCID:PMC2288615.</p><p></p

Data_Sheet_2_A New Single Nucleotide Polymorphism Database for Rainbow Trout Generated Through Whole Genome Resequencing.XLSX

<p>Single-nucleotide polymorphisms (SNPs) are highly abundant markers, which are broadly distributed in animal genomes. For rainbow trout (Oncorhynchus mykiss), SNP discovery has been previously done through sequencing of restriction-site associated DNA (RAD) libraries, reduced representation libraries (RRL) and RNA sequencing. Recently we have performed high coverage whole genome resequencing with 61 unrelated samples, representing a wide range of rainbow trout and steelhead populations, with 49 new samples added to 12 aquaculture samples from AquaGen (Norway) that we previously used for SNP discovery. Of the 49 new samples, 11 were double-haploid lines from Washington State University (WSU) and 38 represented wild and hatchery populations from a wide range of geographic distribution and with divergent migratory phenotypes. We then mapped the sequences to the new rainbow trout reference genome assembly (GCA_002163495.1) which is based on the Swanson YY doubled haploid line. Variant calling was conducted with FreeBayes and SAMtools mpileup, followed by filtering of SNPs based on quality score, sequence complexity, read depth on the locus, and number of genotyped samples. Results from the two variant calling programs were compared and genotypes of the double haploid samples were used for detecting and filtering putative paralogous sequence variants (PSVs) and multi-sequence variants (MSVs). Overall, 30,302,087 SNPs were identified on the rainbow trout genome 29 chromosomes and 1,139,018 on unplaced scaffolds, with 4,042,723 SNPs having high minor allele frequency (MAF > 0.25). The average SNP density on the chromosomes was one SNP per 64 bp, or 15.6 SNPs per 1 kb. Results from the phylogenetic analysis that we conducted indicate that the SNP markers contain enough population-specific polymorphisms for recovering population relationships despite the small sample size used. Intra-Population polymorphism assessment revealed high level of polymorphism and heterozygosity within each population. We also provide functional annotation based on the genome position of each SNP and evaluate the use of clonal lines for filtering of PSVs and MSVs. These SNPs form a new database, which provides an important resource for a new high density SNP array design and for other SNP genotyping platforms used for genetic and genomics studies of this iconic salmonid fish species.</p

Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection-0

<p><b>Copyright information:</b></p><p>Taken from "Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection"</p><p>http://www.biomedcentral.com/1471-2156/9/18</p><p>BMC Genetics 2008;9():18-18.</p><p>Published online 26 Feb 2008</p><p>PMCID:PMC2288615.</p><p></p

Sílabo de Desarrollo II

El curso de Desarrollo Humano II es un curso obligatorio del cuarto nivel del programa de formación profesional intermedia (FPI) de la facultad de psicología. Es un curso teóricopráctico que desarrolla competencias teórico-conceptuales. Conlleva a los estudiantes a conocer con detenimiento las características generales y específicas que se incluyen dentro de los procesos de maduración y desarrollo humano a nivel físico, cognitivo - intelectual, de personalidad, emocional y en cuanto a las relaciones interpersonales que las personas enfrentan en las etapas de la juventud, adultez y vejez. Siguiendo con la asignatura de Desarrollo Humano I, aborda las distintas teorías que muestran las particularidades y dificultades propias del desarrollo en dichas etapas. Analiza el factor cognitivo, emocional, social y moral del joven y su tránsito entre la adolescencia y la adultez; asimismo, trata de comprender el rol de la juventud en la sociedad. Examina la adultez como una etapa de desarrollo de competencias laborales así como en sus relaciones interpersonales y en su vida conyugal. Comprende todo el proceso del envejecimiento humano propio de la senectud. Presenta a su vez los desafíos y los factores de riesgo de estas etapas tomando en cuenta las características de las personas en la relación con su entorno y en función a su etapa de vida

A linkage map of the Atlantic salmon () based on EST-derived SNP markers-2

Inkage group nomenclature (numbers) is the same as in the map developed by the SALMAP project [15], except for one linkage group (sA/dA) that contains no markers present on the SALMAP map. The map units are Kosambi cM.<p><b>Copyright information:</b></p><p>Taken from "A linkage map of the Atlantic salmon () based on EST-derived SNP markers"</p><p>http://www.biomedcentral.com/1471-2164/9/223</p><p>BMC Genomics 2008;9():223-223.</p><p>Published online 15 May 2008</p><p>PMCID:PMC2405805.</p><p></p

A linkage map of the Atlantic salmon () based on EST-derived SNP markers-3

E and female homologue were considered (i.e. linkage groups 17 and 21 were excluded).<p><b>Copyright information:</b></p><p>Taken from "A linkage map of the Atlantic salmon () based on EST-derived SNP markers"</p><p>http://www.biomedcentral.com/1471-2164/9/223</p><p>BMC Genomics 2008;9():223-223.</p><p>Published online 15 May 2008</p><p>PMCID:PMC2405805.</p><p></p

Barson_et_al_GenABEL

File in GenABEL format containing SNP genotype and individual phenotype informatio

Barson_et_al_candidate_region_sequences_and_QTN_table

Barson_et_al_candidate_region_sequences_and_QTN_tabl