872 research outputs found

    Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation

    Get PDF
    Magnetic Resonance Imaging (MRI) is widely used in routine clinical diagnosis and treatment. However, variations in MRI acquisition protocols result in different appearances of normal and diseased tissue in the images. Convolutional neural networks (CNNs), which have shown to be successful in many medical image analysis tasks, are typically sensitive to the variations in imaging protocols. Therefore, in many cases, networks trained on data acquired with one MRI protocol, do not perform satisfactorily on data acquired with different protocols. This limits the use of models trained with large annotated legacy datasets on a new dataset with a different domain which is often a recurring situation in clinical settings. In this study, we aim to answer the following central questions regarding domain adaptation in medical image analysis: Given a fitted legacy model, 1) How much data from the new domain is required for a decent adaptation of the original network?; and, 2) What portion of the pre-trained model parameters should be retrained given a certain number of the new domain training samples? To address these questions, we conducted extensive experiments in white matter hyperintensity segmentation task. We trained a CNN on legacy MR images of brain and evaluated the performance of the domain-adapted network on the same task with images from a different domain. We then compared the performance of the model to the surrogate scenarios where either the same trained network is used or a new network is trained from scratch on the new dataset.The domain-adapted network tuned only by two training examples achieved a Dice score of 0.63 substantially outperforming a similar network trained on the same set of examples from scratch.Comment: 8 pages, 3 figure

    Quantitative parameters in dynamic contrast-enhanced magnetic resonance imaging for the detection and characterization of prostate cancer

    Get PDF
    Objectives: to assess the diagnostic accuracy of quantitative parameters of DCE-MRI in multi-parametric MRI (mpMRI) in comparison to the histopathology (including Gleason grade) of prostate cancer.Patients and methods: 150 men with suspected prostate cancer (abnormal digital rectum examination and or elevated prostate-specific antigen) received pre-biopsy 3T mpMRI and were recruited into peer-reviewed, protocol-based prospective study. The DCE-MRI quantitative parameters (Ktrans (influx transfer constant) and kep (efflux rate constant)) of the cancerous and normal areas were recorded using four different kinetic models employing Olea Sphere (Olea Medical, La Ciotat, France). The correlation between these parameters and the histopathology of the lesions (biopsy and in a sub-cohort 41 radical prostatectomy specimen) was assessed.Results: The quantitative parameters showed a significant difference between non-cancerous (benign) and cancerous lesions (Gleason score≥3+3) in the prostate gland. The cut-off values for prostate cancer differentiation were: Ktrans (0.205 min-1) and kep (0.665 min-1) in the extended Tofts model (ET) and Ktrans(0.205 min-1 and kep (0.63 min-1) in the Lawrence and Lee delay (LD) models respectively. The mean Ktrans value also showed a difference between low-grade cancer (Gleason score=3+3) and high-grade cancer (Gleason score ≥ 3+4). With the addition of DCE-MRI quantitative parameters, the sensitivity of the PIRAD scoring system was increased from 56.6% to 92.1% (Ktrans_ET), 93.1% (kep_ET), 91.0%, (Ktrans_LD) and 89.4% (kep_LD).Conclusion: Quantitative DCE-MRI parameters improved the diagnostic performance of conventional MRI in distinguishing normal and prostate cancers, including characterization of grade of cancers. The ET and LD models in post-image processing analysis provided better cut-off values for prostate cancer differentiation than the other quantitative DCE-MRI parameters

    Transforming Cancer Care: NCIGT’s Trailblazing Journey in Image-Guided Therapy for Prostate Cancer

    Get PDF
    Clare M. Tempany, MD Center Director, National Center for Image Guided Therapies Vice-Chair of Radiology Research, Brigham & Women’s Hospital Ferenc Jolesz MD Professor of Radiology, Harvard Medical Schoolhttps://openworks.mdanderson.org/igct_seminars/1006/thumbnail.jp

    Investigation of active tracking for robotic arm assisted magnetic resonance guided focused ultrasound ablation

    Get PDF
    Background: Focused ultrasound surgery (FUS) is a technique that does not need invasive access to the patient while allowing precise targeted therapy. Magnetic resonance (MR) guided FUS provides capabilities for monitoring treatments. Considering that the targeted tumours are distributed at different positions, focus repositioning becomes necessary.Methods: We used an MR compatible robot to increase the operational range of FUS application. Active tracking was developed to detect the robotic arm in regards to the MR coordinate system. The purpose of this study was to construct active tracking to allow a wide spatial range of repositioning the FUS transducer that is fast and accurate. The technique was characterised and validated by a series of positioning tests to prove its efficiency for guiding the robot.Results: In the calibration range, the tracking could achieve an accuracy of RMS=0.63 mm. Results of phantom ablation showed a focal scanning precision of Δx=0.4±0.37 mm, Δy=0.4±0.28 mm and Δz=0.7±0.66 mm.Conclusions: The active tracking localisation can be considered as a feasible approach for the MR guided FUS system positioned by a robot

    In Vivo Quantification of Placental Insufficiency by BOLD MRI: A Human Study

    Get PDF
    Fetal health is critically dependent on placental function, especially placental transport of oxygen from mother to fetus. When fetal growth is compromised, placental insufficiency must be distinguished from modest genetic growth potential. If placental insufficiency is present, the physician must trade off the risk of prolonged fetal exposure to placental insufficiency against the risks of preterm delivery. Current ultrasound methods to evaluate the placenta are indirect and insensitive. We propose to use Blood-Oxygenation-Level-Dependent (BOLD) MRI with maternal hyperoxia to quantitatively assess mismatch in placental function in seven monozygotic twin pairs naturally matched for genetic growth potential. In-utero BOLD MRI time series were acquired at 29 to 34 weeks gestational age. Maps of oxygen Time-To-Plateau (TTP) were obtained in the placentas by voxel-wise fitting of the time series. Fetal brain and liver volumes were measured based on structural MR images. After delivery, birth weights were obtained and placental pathological evaluations were performed. Mean placental TTP negatively correlated with fetal liver and brain volumes at the time of MRI as well as with birth weights. Mean placental TTP positively correlated with placental pathology. This study demonstrates the potential of BOLD MRI with maternal hyperoxia to quantify regional placental function in vivo.National Institutes of Health (U.S.) (Grant U01 HD087211)National Institutes of Health (U.S.) (Grant R01 EB017337

    Tuned Out. Traditional Music and Identity in Northern Ireland

    Get PDF
    Tuned Out offers a lively and informative history of traditional music in Ireland in which the author attempts to account for the increasing absence of Protestant musicians from the contemporary traditional music scene. By re-visiting the significance of the revival period for traditional music and demonstrating an acute awareness of how the political context shaped both opinion and practice, the author presents an original and multi-faceted piece of work which will make a worthy contribution..
    corecore