Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants

Sequences of two chloroplast photosystem genes, psaA and psbB, together comprising about 3,500 bp, were obtained for all five major groups of extant seed plants and several outgroups among other vascular plants. Strongly supported, but significantly conflicting, phylogenetic signals were obtained in parsimony analyses from partitions of the data into first and second codon positions versus third positions. In the former, both genes agreed on a monophyletic gymnosperms, with Gnetales closely related to certain conifers. In the latter, Gnetales are inferred to be the sister group of all other seed plants, with gymnosperms paraphyletic. None of the data supported the modern ‘‘anthophyte hypothesis,’’ which places Gnetales as the sister group of flowering plants. A series of simulation studies were undertaken to examine the error rate for parsimony inference. Three kinds of errors were examined: random error, systematic bias (both properties of finite data sets), and statistical inconsistency owing to long-branch attraction (an asymptotic property). Parsimony reconstructions were extremely biased for third-position data for psbB. Regardless of the true underlying tree, a tree in which Gnetales are sister to all other seed plants was likely to be reconstructed for these data. None of the combinations of genes or partitions permits the anthophyte tree to be reconstructed with high probability. Simulations of progressively larger data sets indicate the existence of long-branch attraction (statistical inconsistency) for third-position psbB data if either the anthophyte tree or the gymnosperm tree is correct. This is also true for the anthophyte tree using either psaA third positions or psbB first and second positions. A factor contributing to bias and inconsistency is extremely short branches at the base of the seed plant radiation, coupled with extremely high rates in Gnetales and nonseed plant outgroups. M. J. Sanderson,* M. F. Wojciechowski,*† J.-M. Hu,* T. Sher Khan,* and S. G. Brad

Variation in leaf structure of the invasive Madeira vine (Anredera cordifolia, Basellaceae) at different light levels

Madeira vine (Anredera cordifolia (Ten.) Steenis) is a climber in the angiosperm family Basellaceae. It is native to South America and has naturalised in Australia. It is regarded as a serious environmental weed because of the structural damage it causes to native vegetation. The present study, for the first time, documents anatomical and morphological traits of the leaves of A. cordifolia and considers their implications for its ecology and physiology. Plants were grown under three different light levels, and anatomical and morphological leaf characters were compared among light levels, among cohorts, and with documented traits of the related species, Basella alba L. Stomata were present on both the adaxial and abaxial sides of the leaf, with significantly more stomata on the abaxial side and under high light. This may account for the ability of this species to fix large amounts of carbon and rapidly respond to light gaps. The leaves had very narrow veins and no sclerenchyma, suggesting a low construction cost that is associated with invasive plants. There was no significant difference in any of the traits among different cohorts, which agrees with the claim that A. cordifolia primarily propagates vegetatively. The anatomy and morphology of A. cordifolia was similar to that of B. alba

Germination Biology and Occurrence of Polyembryony in Two Forms of Cats Claw Creeper Vine, Dolichandra unguis-cati (Bignoniaceae): Implications for Its Invasiveness and Management

Cat’s claw creeper vine, Dolichandra unguis-cati (L.) Lohmann (syn. Macfadyena unguis-cati (L.) Gentry), is a major environmental weed in Australia. Two forms of the weed with distinctive leaf morphology and reproductive traits, including varying fruit size, occur in Queensland, Australia. The long pod form occurs in a few localities in Queensland, while the short pod form is widely distributed in Queensland and northern part of New South Wales. This investigation aimed to evaluate germination behavior and occurrence of polyembryony (production of multiple seedlings from a single seed) in the two forms of the weed. Seeds were germinated in growth chambers set to 10/20°C, 15/25°C, 20/30°C, 30/45°C and 25°C, representing ambient temperature conditions of the region. Germination and polyembryony were monitored over a period of 12 weeks. For all the treatments in this study, seeds from short pod plants exhibited significantly higher germination rates and higher occurrence of polyembryony than those from long pod plants. Seeds from long pod plants did not germinate at the lowest temperature of 10/20°C; in contrast, those of the short pod form germinated under this condition, albeit at a lower rate (reaching a maximum 45% germination at week 12). Results from this study could explain why the short pod form of D. unguis-cati is the more widely distributed plants in Australia, while the long pod is confined to a few localities. The results have implication in predicting future range of both forms of the invasive D. unguis-cati, as well as inform management decisions for control of the weed

Micromorfología y anatomía foliar de Myrceugenia rufa (Myrtaceae). Un arbusto costero endémico de la zona centro-norte de Chile

Species of fleshy-fruited Myrtaceae are generally associated with humid environments and their vegetative anatomy is mainly mesophytic. Myrceugenia rufa is an endemic and rare species from arid zones of the coast of central Chile and there are no anatomical studies regarding its leaf anatomy and environmental adaptations. Here we describe the leaf micromorphology and anatomy of the species using standard protocols for light and scanning electron microscopy. The leaf anatomy of M. rufa matches that of other Myrtaceae, such as presence of druses, schizogenous secretory ducts and internal phloem. Leaves of M. rufa exhibit a double epidermis, thick cuticle, abundant unicellular hairs, large substomatal chambers covered by trichomes and a dense palisade parenchyma. Leaf characters of M. rufa confirm an anatomical adaptation to xerophytic environments.Las especies con frutos carnosos de Myrtaceae están generalmente asociadas a ambientes húmedos y su anatomía vegetativa es principalmente mesofítica. Myrceugenia rufa es una especie rara y endémica de lugares secos de la costa de Chile central y no hay estudios anatómicos de sus hojas en términos de adaptaciones ambientales. En este artículo describimos la micromorfología y anatomía foliar de la especie usando protocolos estándar para microscopia óptica y electrónica de barrido. La anatomía foliar de M. rufa es similar a otras especies de Myrtaceae, en lo que respecta a presencia de drusas, canales secretores esquizógenos y floema interno. Las hojas de M. rufa tienen una epidermis doble, cutícula gruesa, pelos unicelulares abundantes, cavidades subestomáticas amplias y cubiertas por tricomas, y un denso parénquima en empalizada. Los caracteres foliares de la especie confirman una afinidad morfoanatómica a ambientes xerofíticos

Eco-physiological performance may contribute to differential success of two forms of an invasive vine, Dolichandra unguis-cati, in Australia

Invasive plant species are hypothesized as being more efficient at resource acquisition and use, resulting in faster growth than co-occurring non-invasive plant species. Nonetheless, some findings suggest that trait differences between invasive and non-invasive species are context dependent. In this study, two forms of an invasive vine species, Dolichandra unguis-cati, were used to test the context-dependent hypothesis. Dolichandra unguis-cati is a weed of national significance in Australia with two different forms: the ‘long pod’ (LP) and ‘short pod’ (SP). The two forms have different levels of distribution on the eastern Seaboard of the continent, with the SP form occurring extensively in both States of Queensland and New South Wales while the LP form is found only in isolated sites in South-East Queensland. This study examines whether differences in eco-physiological performance could be responsible for differential success of the two forms. A partially factorial experiment was set up in controlled conditions where potted plants of both forms were grown under two levels of light, water and nutrient resources (high and low) for 15 months. We measured several traits that are known to correlate with plant performance and resource use efficiency (RUE). The SP form exhibited higher values of carbon assimilation, RUE, number of subterranean tubers and leaf nitrogen than the LP form. However, the LP form produced greater biomass than the SP form, with the difference driven mainly by high resource conditions. The LP form displayed significantly higher phenotypic integration (number of traits significantly correlated) than the SP form in response to all treatments while the SP form exhibited higher phenotypic integration than the LP form in response to high resource conditions only. The SP form displayed traits that are well suited for successful colonization, possibly explaining its increased success in Australia, while the LP form possessed traits of opportunistic plants. Overall, we find that the two forms of the weedy vine deploy different carbon economies in response to resource conditions, which is evidence of the context-dependent trait hypothesis

Eco-physiological performance may contribute to differential success of two forms of an invasive vine, Dolichandra unguis-cati, in Australia

Invasive plant species are hypothesized as being more efficient at resource acquisition and use, resulting in faster growth than co-occurring non-invasive plant species. Nonetheless, some findings suggest that trait differences between invasive and non-invasive species are context dependent. In this study, two forms of an invasive vine species, Dolichandra unguis-cati, were used to test the context-dependent hypothesis. Dolichandra unguis-cati is a weed of national significance in Australia with two different forms: the 'long pod' (LP) and 'short pod' (SP). The two forms have different levels of distribution on the eastern Seaboard of the continent, with the SP form occurring extensively in both States of Queensland and New South Wales while the LP form is found only in isolated sites in South-East Queensland. This study examines whether differences in eco-physiological performance could be responsible for differential success of the two forms. A partially factorial experiment was set up in controlled conditions where potted plants of both forms were grown under two levels of light, water and nutrient resources (high and low) for 15 months. We measured several traits that are known to correlate with plant performance and resource use efficiency (RUE). The SP form exhibited higher values of carbon assimilation, RUE, number of subterranean tubers and leaf nitrogen than the LP form. However, the LP form produced greater biomass than the SP form, with the difference driven mainly by high resource conditions. The LP form displayed significantly higher phenotypic integration (number of traits significantly correlated) than the SP form in response to all treatments while the SP form exhibited higher phenotypic integration than the LP form in response to high resource conditions only. The SP form displayed traits that are well suited for successful colonization, possibly explaining its increased success in Australia, while the LP form possessed traits of opportunistic plants. Overall, we find that the two forms of the weedy vine deploy different carbon economies in response to resource conditions, which is evidence of the context-dependent trait hypothesis

Variation in leaf morphology of the invasive cat's claw creeper Dolichandra unguis-cati (Bignoniaceae)

Abstract. The invasive liana cat's claw creeper Dolichandra unguis-cati (L.) L.G. Lohmann (syn. Macfadyena unguis-cati (L.) A.H. Gentry) exhibits intraspecific variation in leaf morphology, but this is rarely noted in the published literature. The present study documents variation in leaf morphology in two forms of the species that occur in Australia (long pod and short pod). Leaf morphology is compared between the two forms and the position of the shoots (trunk and ground) at the only two sites in which they co-occur. Leaves were categorised on the basis of leaflet number and the presence or absence of tendrils. Simple leaves were produced mainly on shoots growing along the ground and were more abundant in the short-pod form. Long-pod plants were dominated by bifoliate leaves with tendrils. Cat's claw creeper exhibits considerably wider variation in leaf morphology than recorded previously. Variations in leaf morphology may be linked to differences in the genotype, developmental stage and plastic responses of the plants. Understanding these variations may have implications for taxonomic delimitation and improved management, particularly biological control involving leaf-feeding insects

Character evolution in Anaxagorea (Annonaceae)

Anaxagorea is a critical genus for understanding morphological evolution in Annonaceae because it shares a variety of features with other Magnoliales that have been interpreted as primitive relative to other Annonaceae. We present a detailed discussion of morphological characters used in a combined morphological and molecular phylogenetic analysis of Anaxagorea, along with implications of the analysis for character evolution in the genus. In spite of a high level of homoplasy in stamen and leaf venation characters, their removal results in loss of resolution in the trees obtained. The distributions of characters on trees confirm assumptions that several distinctive similarities between Anaxagorea and other Magnoliales are primitive retentions (e.g., the presence of an adaxial plate of xylem in the midrib, nonpeltate stamen connectives, inner staminodes, and several leaf architectural characters). However, lateral extensions of the "laminar" stamens, though possibly ancestral in Anaxagorea, are convergent with those in other Magnoliales. A number of morphological synapomorphies have been identified for a clade containing most Central American species and another comprising all Asian species (e.g., conical bud shape and reduced inner petals for the Central American clade, and adaxial cuticular striations and capitate stigma shape for the Asian clade)

Plant structure and systematics research at the Queensland University of Technology (QUT), Brisbane

This article provides a general overview of some of the plant research being conducted by a number of researchers at the Queensland University of Technology (QUT) Brisbane. Details about student projects and research facilities have been limited to those of relevance to plant structure and systematics. Academics, technicians and research students involved in plant research are in the Faculty of Science and Engineering, mainly in the School of Earth, Environment and Biological Sciences (EEBS), with a few exceptions. Our offices and laboratories are housed in a number of different buildings at the Gardens Point campus (e.g., P, Q, R, S, M Blocks) and we have strong collaborative links with Queensland Herbarium (BRI) and Mt Coot-tha Botanic Gardens