46,781 research outputs found
Quarkonium spin structure in lattice NRQCD
Numerical simulations of the quarkonium spin splittings are done in the
framework of lattice nonrelativistic quantum chromodynamics (NRQCD). At leading
order in the velocity expansion the spin splittings are of , where
is the renormalized quark mass and is the mean squared quark
velocity. A systematic analysis is done of all next-to-leading order
corrections. This includes the addition of relativistic
interactions, and the removal of discretization errors in the
leading-order interactions. Simulations are done for both S- and P-wave mesons,
with a variety of heavy quark actions and over a wide range of lattice
spacings. Two prescriptions for the tadpole improvement of the action are also
studied in detail: one using the measured value of the average plaquette, the
other using the mean link measured in Landau gauge. Next-to-leading order
interactions result in a very large reduction in the charmonium splittings,
down by about 60% from their values at leading order. There are further
indications that the velocity expansion may be poorly convergent for
charmonium. Prelimary results show a small correction to the hyperfine
splitting in the Upsilon system.Comment: 16 pages, REVTEX v3.1, 5 postscript figures include
Tadpole renormalization and relativistic corrections in lattice NRQCD
We make a comparison of two tadpole renormalization schemes in the context of
the quarkonium hyperfine splittings in lattice NRQCD. Improved gauge-field and
NRQCD actions are analyzed using the mean-link in Landau gauge, and
using the fourth root of the average plaquette . Simulations are done
for , , and systems. The hyperfine splittings are
computed both at leading and at next-to-leading order in the relativistic
expansion. Results are obtained at lattice spacings in the range of about
0.14~fm to 0.38~fm. A number of features emerge, all of which favor tadpole
renormalization using . This includes much better scaling behavior of
the hyperfine splittings in the three quarkonium systems when is
used. We also find that relativistic corrections to the spin splittings are
smaller when is used, particularly for the and
systems. We also see signs of a breakdown in the NRQCD expansion when the bare
quark mass falls below about one in lattice units. Simulations with
also appear to be better behaved in this context: the bare quark masses turn
out to be larger when is used, compared to when is used on
lattices with comparable spacings. These results also demonstrate the need to
go beyond tree-level tadpole improvement for precision simulations.Comment: 14 pages, 7 figures (minor changes to some phraseology and
references
Modelling failure mechanisms of soft cliff profiles
A large proportion of the 11,000 km coastline of the United Kingdom is backed by soft cliffs. These cliffs are subject to frequent slumping and landslip events, particularly where sea and ground water percolates into the soil and rock. Many of these cliffs are formed from glaciogenic sediments, which experience severe erosion and rapid recession with long-term horizontal recession rates typically up to 2-3 m/year. A series of scaled physical model tests have been conducted using a large centrifuge facility with two-dimensional cliff models. These were tested in a wave flume container located on the centrifuge. Wave loading was created using a quasi-flap paddle system that was located at the opposite end of the centrifuge box. A number of tests were conducted using different cliff materials (i.e. combinations of sand and Portland cement). A parametric study was carried out to assess the influence of variations in cliff geometry and height, soil properties, wave amplitude and period. From these tests, it has been found that generally, failures occurred by progressive undercutting of the cliff toe, followed by global failure of the cliff mass
Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation
Background
Outer membrane proteins (OMPs) of Pasteurella multocida have various functions related to virulence and pathogenesis and represent important targets for vaccine development. Various bioinformatic algorithms can predict outer membrane localization and discriminate OMPs by structure or function. The designation of a confident prediction framework by integrating different predictors followed by consensus prediction, results integration and manual confirmation will improve the prediction of the outer membrane proteome.
Results
In the present study, we used 10 different predictors classified into three groups (subcellular localization, transmembrane β-barrel protein and lipoprotein predictors) to identify putative OMPs from two available P. multocida genomes: those of avian strain Pm70 and porcine non-toxigenic strain 3480. Predicted proteins in each group were filtered by optimized criteria for consensus prediction: at least two positive predictions for the subcellular localization predictors, three for the transmembrane β-barrel protein predictors and one for the lipoprotein predictors. The consensus predicted proteins were integrated from each group into a single list of proteins. We further incorporated a manual confirmation step including a public database search against PubMed and sequence analyses, e.g. sequence and structural homology, conserved motifs/domains, functional prediction, and protein-protein interactions to enhance the confidence of prediction. As a result, we were able to confidently predict 98 putative OMPs from the avian strain genome and 107 OMPs from the porcine strain genome with 83% overlap between the two genomes.
Conclusions
The bioinformatic framework developed in this study has increased the number of putative OMPs identified in P. multocida and allowed these OMPs to be identified with a higher degree of confidence. Our approach can be applied to investigate the outer membrane proteomes of other Gram-negative bacteria
The D234 action for light quarks
We investigate a new light fermion action (the ``D234'' action), which is
accurate up to \O(a^3) and tadpole-improved \O(a \alpha_s) errors. Using
D234 with Symanzik- and tadpole-improved glue we find evidence that continuum
results for the quenched hadron spectrum (pion, rho and nucleon) can be
obtained on coarse lattices.Comment: Latex, 4 pages, submitted to Lattice '95 proceeding
Thermospheric winds and temperatures above Mawson, Antarctica, observed with an all-sky imaging, Fabry-Perot spectrometer
A new all-sky imaging Fabry-Perot spectrometer has been installed at Mawson station (67&deg;36' S, 62&deg;52' E), Antarctica. This instrument is capable of recording independent spectra from many tens of locations across the sky simultaneously. Useful operation began in March 2007, with spectra recorded on a total of 186 nights. Initial analysis has focused on the large-scale daily and average behavior of winds and temperatures derived from observations of the 630.0 nm airglow line of atomic oxygen, originating from a broad layer centered around 240 km altitude, in the ionospheric F-region. <br><br> The 1993 Horizontal Wind Model (HWM93), NRLMSISE-00 atmospheric model, and the Coupled Thermosphere/Ionosphere Plasmasphere (CTIP) model were used for comparison. During the geomagnetically quiet period studied, observed winds and temperatures were generally well modelled, although temperatures were consistently higher than NRLMSISE-00 predicted, by up to 100 K. CTIP temperatures better matched our data, particularly later in the night, but predicted zonal winds which were offset from those observed by 70–180 ms<sup>&minus;1</sup> westward. During periods of increased activity both winds and temperatures showed much greater variability over time-scales of less than an hour. For the active night presented here, a period of 45 min saw wind speeds decrease by around 180 ms<sup>&minus;1</sup>, and temperatures increase by approximately 100 K. Active-period winds were poorly modelled by HWM93 and CTIP, although observed median temperatures were in better agreement with NRLMSISE-00 during such periods. <br><br> Average behavior was found to be generally consistent with previous studies of thermospheric winds above Mawson. The collected data set was representative of quiet geomagnetic and solar conditions. Geographic eastward winds in the afternoon/evening generally continued until around local midnight, when winds turned equatorward. Geographic meridional and zonal winds in the afternoon were approximately 50 ms<sup>&minus;1</sup> weaker than expected from HWM93, as was the transition to equatorward flow around midnight. There was also a negligible geographic zonal component to the post-midnight wind where HWM93 predicted strong westward flow. Average temperatures between 19:00 and 04:00 local solar time were around 60 K higher than predicted by NRLMSISE-00
Precision Charmonium Spectroscopy From Lattice QCD
We present results for Charmonium spectroscopy using Non-Relativistic QCD
(NRQCD). For the NRQCD action the leading order spin-dependent and next to
leading order spin-independent interactions have been included with
tadpole-improved coefficients. We use multi-exponential fits to multiple
correlation functions to extract ground and excited states. Splittings
between the lowest , and states are given and we have accurate
values for the state hyperfine splitting and the fine structure.
Agreement with experiment is good - the remaining systematic errors are
discussed.Comment: 23 pages uuencoded latex file. Contains figures in late
Identifying the transporters of different flavonoids in plants
We recently identified a new component of flavonoid transport pathways in Arabidopsis. The MATE protein FFT (Flower Flavonoid Transporter) is primarily found in guard cells and seedling roots, and mutation of the transporter results in floral and growth phenotypes. The nature of FFT’s substrate requires further exploration but our data suggest that it is a kaempferol diglucoside. Here we discuss potential partner H+-ATPases and possible redundancy among the close homologues within the large Arabidopsis MATE family
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