Earthworm communities in an agroforest system: Impact of tree rows on the distribution in grassland and cropped land

Agroforest systems are highly discussed as new and innovative land use systems for arable land in temperate regions. They are recommended due to their beneficial impact on several ecosystem functions and for the general diversification of the cultured landscapes. Tree rows, known as alley cropping systems, are one of the most frequent applications. In May 2016 earthworm communities were sampled in an agroforest system in Reiffenhausen south of Göttingen using an electrical extraction system. Asking for the impact of tree rows on the spatial distribution of earthworms, sampling was done in distances of 0, 1, and 4.5m from the alleys (willow on grassland and poplar on cropland). Also grassland and cropland with no trees were sampled as a control. At Reiffenhausen we obtained 6 different species covering all ecological groups of earthworms. Abundances indicated a step gradient for earthworm numbers in the combination of poplar with cropland with decreasing numbers with increasing distance. However, the gradient was not indicated for willow rows on grassland. An effect of hypnotized earthworm supporting factors like litter entry and shading couldn’t be fully confirmed. More data is needed to value agroforest systems for their impact on key organisms and key functions of soil biota

Violation of pseudospin symmetry in nucleon-nucleus scattering: exact relations

An exact determination of the size of the pseudospin symmetry violating part of the nucleon-nucleus scattering amplitude from scattering observables is presented. The approximation recently used by Ginocchio turns out to underestimate the violation of pseudospin symmetry. Nevertheless the conclusion of a modestly broken pseudospin symmetry in proton-208Pb scattering at EL=800MeV remains valid.Comment: 8 pages, 2 figure

Classification Models of Idiopathic Pulmonary Fibrosis Patients

Idiopathic pulmonary fibrosis (IPF) is a chronic and fatal interstitial lung disease with no current cure. Progression of IPF is difficult to predict as the clinical course can be highly variable and range from a rapidly deteriorating state to a relatively stable state, or may be characterized by a slow progressive decline. Therefore, the need for an accurate diagnosis and improved tools for monitoring and managing IPF is of paramount importance, all for understanding the mitochondrial structure and the function played in the IPF. Mitochondrial DNA copy number (MtDCN) has been correlated with mortality in IPF patients and is a source of potentially clinically relevant information. We investigated the effects of various expiratory variables on MtDCN via multiple linear regression models. The models and their theoretical framework are presented under a descriptive and then analytic approach to investigate the complex and impact causes of IPF. Generalized linear model (GLM) based boosting is fitted before and after imputing the missing data. The Bayesian Hierarchical logistic models with categorical response variables that were created using carefully chosen cut-off points to classify the patients. This research provides an opportunity for novel patient surveillances

Shell model description of normal parity bands in odd-mass heavy deformed nuclei

The low-energy spectra and B(E2) electromagnetic transition strengths of 159Eu, 159Tb and 159Dy are described using the pseudo SU(3) model. Normal parity bands are built as linear combinations of SU(3) states, which are the direct product of SU(3) proton and neutron states with pseudo spin zero (for even number of nucleons) and pseudo spin 1/2 (for odd number of nucleons). Each of the many-particle states have a well-defined particle number and total angular momentum. The Hamiltonian includes spherical Nilsson single-particle energies, the quadrupole-quadrupole and pairing interactions, as well as three rotor terms which are diagonal in the SU(3) basis. The pseudo SU(3) model is shown to be a powerful tool to describe odd-mass heavy deformed nuclei.Comment: 11 pages, 2 figures, Accepted to be published in Phys. Rev.

Pseudospin symmetry and its approximation in real nuclei

The origin of pseudospin symmetry and its broken in real nuclei are discussed in the relativistic mean field theory. In the exact pseudospin symmetry, even the usual intruder orbits have degenerate partners. In real nuclei, pseudospin symmetry is approximate, and the partners of the usual intruder orbits will disappear. The difference is mainly due to the pseudo spin-orbit potential and the transition between them is discussed in details. The contribution of pseudospin-orbit potential for intruder orbits is quite large, compared with that for pseudospin doublets. The disappearance of the pseudospin partner for the intruder orbit can be understood from the properties of its wave function.Comment: 10 pages, 3 figure

Blocking of ERK1 and ERK2 sensitizes human mesothelioma cells to doxorubicin

<p>Abstract</p> <p>Background</p> <p>Malignant mesotheliomas (MM) have a poor prognosis, largely because of their chemoresistance to anti-cancer drugs such as doxorubicin (Dox). Here we show using human MM lines that Dox activates extracellular signal-regulated kinases (ERK1 and 2), causally linked to increased expression of ABC transporter genes, decreased accumulation of Dox, and enhanced MM growth. Using the MEK1/2 inhibitor, U0126 and stably transfected shERK1 and shERK2 MM cell lines, we show that inhibition of both ERK1 and 2 sensitizes MM cells to Dox.</p> <p>Results</p> <p>U0126 significantly modulated endogenous expression of several important drug resistance (<it>BCL2, ABCB1, ABCC3</it>), prosurvival (<it>BCL2</it>), DNA repair (<it>BRCA1, BRCA2</it>), hormone receptor (<it>AR, ESR2, PPARγ</it>) and drug metabolism (<it>CYP3A4</it>) genes newly identified in MM cells. In comparison to shControl lines, MM cell lines stably transfected with shERK1 or shERK2 exhibited significant increases in intracellular accumulation of Dox and decreases in cell viability. Affymetrix microarray analysis on stable shERK1 and shERK2 MM lines showed more than 2-fold inhibition (p ≤ 0.05) of expression of ATP binding cassette genes (<it>ABCG1, ABCA5, ABCA2, MDR/TAP, ABCA1, ABCA8, ABCC2</it>) in comparison to shControl lines. Moreover, injection of human MM lines into SCID mice showed that stable shERK1 or shERK2 lines had significantly slower tumor growth rates in comparison to shControl lines after Dox treatment.</p> <p>Conclusions</p> <p>These studies suggest that blocking ERK1 and 2, which play critical roles in multi-drug resistance and survival, may be beneficial in combination with chemotherapeutic drugs in the treatment of MMs and other tumors.</p

Inter-band B(E2) transition strengths in odd-mass heavy deformed nuclei

Inter-band B(E2) transition strengths between different normal parity bands in 163Dy and 165Er are described using the pseudo-SU(3) model. The Hamiltonian includes Nilsson single-particle energies, quadrupole-quadrupole and pairing interactions with fixed, parametrized strengths, and three extra rotor terms used to fine tune the energy spectra. In addition to inter-band transitions, the energy spectra and the ground state intra-band B(E2) strengths are reported. The results show the pseudo-SU(3) shell model to be a powerful microscopic theory for a description of the normal parity sector in heavy deformed odd-A nuclei.Comment: 4 figures, 2 table

Implications of Pseudospin Symmetry on Relativistic Magnetic Properties and Gamow - Teller Transitions in Nuclei

Recently it has been shown that pseudospin symmetry has its origins in a relativistic symmetry of the Dirac Hamiltonian. Using this symmetry we relate single - nucleon relativistic magnetic moments of states in a pseudospin doublet to the relativistic magnetic dipole transitions between the states in the doublet, and we relate single - nucleon relativistic Gamow - Teller transitions within states in the doublet. We apply these relationships to the Gamow - Teller transitions from $^{39}Ca$ to its mirror nucleus $^{39}K$.Comment: 17 pages, 2 figures, to be published in PRC. Slightly revised text with one reference adde

The pseudo-spin symmetry in Zr and Sn isotopes from the proton drip line to the neutron drip line

Based on the Relativistic continuum Hartree-Bogoliubov (RCHB) theory, the pseudo-spin approximation in exotic nuclei is investigated in Zr and Sn isotopes from the proton drip line to the neutron drip line. The quality of the pseudo-spin approximation is shown to be connected with the competition between the centrifugal barrier (CB) and the pseudo-spin orbital potential (PSOP). The PSOP depends on the derivative of the difference between the scalar and vector potentials $dV/dr$. If $dV/dr = 0$, the pseudo-spin symmetry is exact. The pseudo-spin symmetry is found to be a good approximation for normal nuclei and to become much better for exotic nuclei with highly diffuse potential, which have $dV/dr \sim 0$. The energy splitting of the pseudo-spin partners is smaller for orbitals near the Fermi surface (even in the continuum) than the deeply bound orbitals. The lower components of the Dirac wave functions for the pseudo-spin partners are very similar and almost equal in magnitude.Comment: 22 pages, 9figure

IBEX:A versatile multiplex optical imaging approach for deep phenotyping and spatial analysis of cells in complex tissues

The diverse composition of mammalian tissues poses challenges for understanding the cell–cell interactions required for organ homeostasis and how spatial relationships are perturbed during disease. Existing methods such as single-cell genomics, lacking a spatial context, and traditional immunofluorescence, capturing only two to six molecular features, cannot resolve these issues. Imaging technologies have been developed to address these problems, but each possesses limitations that constrain widespread use. Here we report a method that overcomes major impediments to highly multiplex tissue imaging. “Iterative bleaching extends multiplexity” (IBEX) uses an iterative staining and chemical bleaching method to enable high-resolution imaging of >65 parameters in the same tissue section without physical degradation. IBEX can be employed with various types of conventional microscopes and permits use of both commercially available and user-generated antibodies in an “open” system to allow easy adjustment of staining panels based on ongoing marker discovery efforts. We show how IBEX can also be used with amplified staining methods for imaging strongly fixed tissues with limited epitope retention and with oligonucleotide-based staining, allowing potential cross-referencing between flow cytometry, cellular indexing of transcriptomes and epitopes by sequencing, and IBEX analysis of the same tissue. To facilitate data processing, we provide an open-source platform for automated registration of iterative images. IBEX thus represents a technology that can be rapidly integrated into most current laboratory workflows to achieve high-content imaging to reveal the complex cellular landscape of diverse organs and tissues