Raising and Rising Voices in Social Media - A Novel Methodological Approach in Studying Cyber-Collective Movements

Emerging cyber-collective social movements (CSMs) have frequently made headlines in the news. Despite their popularity, there is a lack of systematic methodologies to empirically study such movements in complex online environments. Using the Al-Huwaider online campaign as a case to illustrate our methodology, this contribution attempts to establish a rigorous and fundamental analysis that explains CSMs. We collected 150 blogs from 17 countries ranging between April 2003 and July 2010 with a special focus on Al-Huwaider’s campaigns capturing multi-cultural aspects for our analysis. Bearing the analysis upon three central tenets of individual, community, and transnational perspectives, we develop novel algorithms modeling CSMs by utilizing existing collective action theories and computational social network analysis. This article contributes a methodology to study the diffusion of issues in social networks and examines roles of influential community members. The proposed methodology provides a rigorous tool to understand the complexity and dynamics of CSMs. Such methodology also assists us in observing the transcending nature of CSMs with future possibilities for modeling transnational outreach. Our study addresses the lack of fundamental research on the formation of CSMs. This research contributes novel methodologies that can be applied to many settings including business, marketing and many others, beyond the exemplary setting chosen here for illustrative purposes

The Gaggle: An open-source software system for integrating bioinformatics software and data sources

BACKGROUND: Systems biologists work with many kinds of data, from many different sources, using a variety of software tools. Each of these tools typically excels at one type of analysis, such as of microarrays, of metabolic networks and of predicted protein structure. A crucial challenge is to combine the capabilities of these (and other forthcoming) data resources and tools to create a data exploration and analysis environment that does justice to the variety and complexity of systems biology data sets. A solution to this problem should recognize that data types, formats and software in this high throughput age of biology are constantly changing. RESULTS: In this paper we describe the Gaggle -a simple, open-source Java software environment that helps to solve the problem of software and database integration. Guided by the classic software engineering strategy of separation of concerns and a policy of semantic flexibility, it integrates existing popular programs and web resources into a user-friendly, easily-extended environment. We demonstrate that four simple data types (names, matrices, networks, and associative arrays) are sufficient to bring together diverse databases and software. We highlight some capabilities of the Gaggle with an exploration of Helicobacter pylori pathogenesis genes, in which we identify a putative ricin-like protein -a discovery made possible by simultaneous data exploration using a wide range of publicly available data and a variety of popular bioinformatics software tools. CONCLUSION: We have integrated diverse databases (for example, KEGG, BioCyc, String) and software (Cytoscape, DataMatrixViewer, R statistical environment, and TIGR Microarray Expression Viewer). Through this loose coupling of diverse software and databases the Gaggle enables simultaneous exploration of experimental data (mRNA and protein abundance, protein-protein and protein-DNA interactions), functional associations (operon, chromosomal proximity, phylogenetic pattern), metabolic pathways (KEGG) and Pubmed abstracts (STRING web resource), creating an exploratory environment useful to 'web browser and spreadsheet biologists', to statistically savvy computational biologists, and those in between. The Gaggle uses Java RMI and Java Web Start technologies and can be found at

Preferential Association of Segment Blocks in Polyurethane Nanocomposites

Submitted to MacromoleculesControlling the level of dispersion of silicate layers in polymer matrices through intermolecular interactions and exploiting these interactions to enhance thermomechanical behavior are key challenges in the field of polymer nanocomposites. In this investigation, unmodified Laponite platelets are dispersed in a segmented polyurethane containing polar, hydrophilic soft segments and a hydrophobic hard segment using a novel solvent exchange method and compared to polyurethane nanocomposites containing more hydrophobic hard and soft domains. It was determined that the silicate layers were preferentially, but not exclusively, attracted to the hydrophilic, polar soft domains. An apparent micro-phase segregated morphology was observed in transmission electron microscopy for this system, revealing regions of exfoliation and intercalation. According to polarizing optical microscopy, strain-induced alignment is inhibited for this polyurethane nanocomposite, which is reflected in dramatic reductions in tensile strength and ultimate extensibility. In comparison, the Laponite discs appear to be preferentially, but not exclusively, embedded to the hard domains in the segmented polyurethanes containing more hydrophobic hard and soft domains. Exfoliation of the clay platelets leads to enhanced modulus and toughness without a reduction in extensibility. This study provides clues for exploiting silicate-polymer interactions to tune material properties without chemical modification.Institute for Soldier Nanotechnology (ISN) at MI

Evaluation of the efficacy of tamsulosin with or without deflazacort for stone clearance after extracorporeal shockwave lithotripsy for upper ureteral and renal calculi

Background: Medical expulsive therapy in the form of alpha blockers, corticosteroids, calcium channel blockers is being used with success for medical treatment of lower ureteric calculus. Adjunctive use of these therapeutic agents in post extracorporeal shockwave lithotripsy period is also being tried.With this background, we evaluated the efficacy of tamsulosin with or without deflazacort for various outcome factors after ESWL of upper ureteral and renal calculi.Methods: A Prospecive study during period from February 2014 to April 2015 including a total of 90 patients with solitary upper ureteral or renal calculus who underwent ESWL was conducted. Patients were divided into three groups. Group A(30 patients) were given standard therapy (analgesics and antibiotics for 5 days), Group B (30 patients) were given standard plus tamsulosin (0.4 mg once daily) for 4 weeks and Group C (30 patients) were given standard therapy plus tamsulosin (0.4 mg once daily) and deflazacort (6 mg twice daily) for 4 weeks . Patients were evaluated at 2 and 4 weeks post ESWL with X ray KUB and USG.Results: At the end of 4 weeks, 10, 17, and 26 patients in group A, B and C respectively cleared their stones. Out of these 2, 6 and 19 patients in group A, B and C respectively cleared their stones in first 2 weeks. Clearance in group C was significantly higher as compared to group A and B.Conclusions: Addition of alpha-blocker tamsulosin along with deflazacort post ESWL for renal and upper ureteric calculi increases the stone expulsion rate and reduces the expulsion duration as shown by highly statistically significant results in group C.

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications

<p>Abstract</p> <p>Background</p> <p>Information resources on the World Wide Web play an indispensable role in modern biology. But integrating data from multiple sources is often encumbered by the need to reformat data files, convert between naming systems, or perform ongoing maintenance of local copies of public databases. Opportunities for new ways of combining and re-using data are arising as a result of the increasing use of web protocols to transmit structured data.</p> <p>Results</p> <p>The Firegoose, an extension to the Mozilla Firefox web browser, enables data transfer between web sites and desktop tools. As a component of the Gaggle integration framework, Firegoose can also exchange data with Cytoscape, the R statistical package, Multiexperiment Viewer (MeV), and several other popular desktop software tools. Firegoose adds the capability to easily use local data to query KEGG, EMBL STRING, DAVID, and other widely-used bioinformatics web sites. Query results from these web sites can be transferred to desktop tools for further analysis with a few clicks.</p> <p>Firegoose acquires data from the web by screen scraping, microformats, embedded XML, or web services. We define a microformat, which allows structured information compatible with the Gaggle to be embedded in HTML documents.</p> <p>We demonstrate the capabilities of this software by performing an analysis of the genes activated in the microbe <it>Halobacterium salinarum NRC-1 </it>in response to anaerobic environments. Starting with microarray data, we explore functions of differentially expressed genes by combining data from several public web resources and construct an integrated view of the cellular processes involved.</p> <p>Conclusion</p> <p>The Firegoose incorporates Mozilla Firefox into the Gaggle environment and enables interactive sharing of data between diverse web resources and desktop software tools without maintaining local copies. Additional web sites can be incorporated easily into the framework using the scripting platform of the Firefox browser. Performing data integration in the browser allows the excellent search and navigation capabilities of the browser to be used in combination with powerful desktop tools.</p

Comparison of Calibration Approaches of the Soil and Water Assessment Tool (SWAT) Model in a Tropical Watershed

Hydrologic models are indispensable tools for water resource planning and management. Accurate model predictions are critical for better water resource development and management decisions. Single-site model calibration and calibrating a watershed model at the watershed outlet are commonly adopted strategies. In the present study, for the first time, a multi-site calibration for the Soil and Water Assessment Tool (SWAT) in the Kelani River Basin with a catchment area of about 2340 km2 was carried out. The SWAT model was calibrated at five streamflow gauging stations, Deraniyagala, Kithulgala, Holombuwa, Glencourse, and Hanwella, with drainage areas of 183, 383, 155, 1463, and 1782 km2, respectively, using three distinct calibration strategies. These strategies were, utilizing (1) data from downstream and (2) data from upstream, both categorized here as single-site calibration, and (3) data from downstream and upstream (multi-site calibration). Considering the performance of the model during the calibration period, which was examined using the statistical indices R2 and NSE, the model performance at Holombuwa was upgraded from “good” to “very good” with the multi-site calibration technique. Simultaneously, the PBIAS at Hanwella and Kithulgala improved from “unsatisfactory” to “satisfactory” and “satisfactory” to “good” model performance, while the RSR improved from “good” to “very good” model performance at Deraniyagala, indicating the innovative multi-site calibration approach demonstrated a significant improvement in the results. Hence, this study will provide valuable insights for hydrological modelers to determine the most appropriate calibration strategy for their large-scale watersheds, considering the spatial variation of the watershed characteristics, thereby reducing the uncertainty in hydrologic predictions.publishedVersio