Local and systemic effect of transfection-reagent formulated DNA vectors on equine melanoma

Background Equine melanoma has a high incidence in grey horses. Xenogenic DNA vaccination may represent a promising therapeutic approach against equine melanoma as it successfully induced an immunological response in other species suffering from melanoma and in healthy horses. In a clinical study, twenty- seven, grey, melanoma-bearing, horses were assigned to three groups (n = 9) and vaccinated on days 1, 22, and 78 with DNA vectors encoding for equine (eq) IL-12 and IL-18 alone or in combination with either human glycoprotein (hgp) 100 or human tyrosinase (htyr). Horses were vaccinated intramuscularly, and one selected melanoma was locally treated by intradermal peritumoral injection. Prior to each injection and on day 120, the sizes of up to nine melanoma lesions per horse were measured by caliper and ultrasound. Specific serum antibodies against hgp100 and htyr were measured using cell based flow- cytometric assays. An Analysis of Variance (ANOVA) for repeated measurements was performed to identify statistically significant influences on the relative tumor volume. For post-hoc testing a Tukey-Kramer Multiple-Comparison Test was performed to compare the relative volumes on the different examination days. An ANOVA for repeated measurements was performed to analyse changes in body temperature over time. A one-way ANOVA was used to evaluate differences in body temperature between the groups. A p–value < 0.05 was considered significant for all statistical tests applied. Results In all groups, the relative tumor volume decreased significantly to 79.1 ± 26.91% by day 120 (p < 0.0001, Tukey-Kramer Multiple-Comparison Test). Affiliation to treatment group, local treatment and examination modality had no significant influence on the results (ANOVA for repeated measurements). Neither a cellular nor a humoral immune response directed against htyr or hgp100 was detected. Horses had an increased body temperature on the day after vaccination. Conclusions This is the first clinical report on a systemic effect against equine melanoma following treatment with DNA vectors encoding eqIL12 and eqIL18 and formulated with a transfection reagent. Addition of DNA vectors encoding hgp100 respectively htyr did not potentiate this effect

A Survey of Bayesian Statistical Approaches for Big Data

The modern era is characterised as an era of information or Big Data. This has motivated a huge literature on new methods for extracting information and insights from these data. A natural question is how these approaches differ from those that were available prior to the advent of Big Data. We present a review of published studies that present Bayesian statistical approaches specifically for Big Data and discuss the reported and perceived benefits of these approaches. We conclude by addressing the question of whether focusing only on improving computational algorithms and infrastructure will be enough to face the challenges of Big Data

Long term reverse annealing in silicon detectors

The methods of isothermal and isochronal heat treatments have been used for further studies of the reverse annealing effect of the effective impurity concentration. These measurements lead to an improved reliability of a second order model, which was already proposed in earlier works. Using only three parameters this model can predict the time dependence of the effective impurity concentration in a wide range of neutron fluences and temperature

Transcriptome analysis of equine sarcoids

Equine sarcoids are the most commonly detected skin tumours in Equidae. In the present research, a comparative transcriptomic analysis was performed which aimed at looking inside a tumour biology and identification of the expression profile as a potential source of cancer specific genes useful as biomarkers. We have used Horse Gene Expression Microarray data from matched equine sarcoids and tumour-distant skin samples. In total, 901 significantly differentially expressed genes (DEGs) between lesional and healthy skin samples have been identified (fold change ≥ 2; P < 0.05). The large subset of DEGs, with decreased expression, was associated with a suppression of malignant transformation, whereas several overexpressed genes were involved in the processes associated with growth and progression of a tumour or immune system activity. Our results, as a first to date, showed comprehensive transcriptome analysis of skin tumour in horses and pinpointed significant pathways and genes related with oncogenesis processes

Reliability of very low-grade metamorphic methods to decipher basin evolution: Case study from the Markstein basin (Southern Vosges, NE France)

International audienceLow- and very low-grade metamorphic studies investigating the alteration and reaction progress of clay minerals are powerful tools to decipher the thermal evolution of sedimentary and inverted meta-sedimentary basins. Sheet silicates such as illite and chlorite are very common in sedimentary basin sequences. They can be used to determine the grade of diagenesis and low-temperature metamorphism as measured through the XRD: illite Kübler-Index (KI; illite “crystallinity” in older literature) and the chlorite Árkai-Index (ÁI; chlorite “crystallinity” in older literature), respectively. Although the ÁI method is considered to be slightly less sensitive than the KI method, a reliable correlation between both methods is often observed in metamorphic domains with a uniform heat-flow history and minor tectono-structural complexity. Complementary to these methods, the K-white mica b cell dimension provides a robust estimate of pressure facies reached in very low- to low-grade temperature domains.Here, we present a case-study from the Markstein basin located in the Southern Vosges. The lithostratigraphic units in the basin are characterized by deep marine flysch sequences of Upper Devonian to Upper Visean age and volcano-clastic sediments, respectively. The Markstein basin is surrounded by granitoids with intrusion ages between 340 and 326 Ma. A previous study showed orogenic deformation characterized by regional folding, and a contact metamorphism found in an outer halo of the granitoids up to 1500 m away from the contact (delineated by the occurrence of biotite). Here we present a multi-disciplinary study combining mineral assemblages, illite and chlorite “crystallinity indices”, and K-white mica b cell dimension. Our approach allows to (i) map in (great) detail the areal extent of both regional/burial metamorphic and contact metamorphic domains; (ii) reveal the metamorphic zonation within both domains; and (iii) better constrain regional/burial and contact metamorphic history. The contact metamorphic domain is characterized by the occurrence of biotite and/or actinolite and low K-white mica b cell dimensions, whereas the zone of incipient orogenic metamorphism yields KI and ÁI values of the high-grade diagenesis and anchizone with intermediate K-white b cell dimensions