2,083 research outputs found
Randomly Charged Polymers, Random Walks, and Their Extremal Properties
Motivated by an investigation of ground state properties of randomly charged
polymers, we discuss the size distribution of the largest Q-segments (segments
with total charge Q) in such N-mers. Upon mapping the charge sequence to
one--dimensional random walks (RWs), this corresponds to finding the
probability for the largest segment with total displacement Q in an N-step RW
to have length L. Using analytical, exact enumeration, and Monte Carlo methods,
we reveal the complex structure of the probability distribution in the large N
limit. In particular, the size of the longest neutral segment has a
distribution with a square-root singularity at l=L/N=1, an essential
singularity at l=0, and a discontinuous derivative at l=1/2. The behavior near
l=1 is related to a another interesting RW problem which we call the "staircase
problem". We also discuss the generalized problem for d-dimensional RWs.Comment: 33 pages, 19 Postscript figures, RevTe
A Model Ground State of Polyampholytes
The ground state of randomly charged polyampholytes is conjectured to have a
structure similar to a necklace, made of weakly charged parts of the chain,
compacting into globules, connected by highly charged stretched `strings'. We
suggest a specific structure, within the necklace model, where all the neutral
parts of the chain compact into globules: The longest neutral segment compacts
into a globule; in the remaining part of the chain, the longest neutral segment
(the 2nd longest neutral segment) compacts into a globule, then the 3rd, and so
on. We investigate the size distributions of the longest neutral segments in
random charge sequences, using analytical and Monte Carlo methods. We show that
the length of the n-th longest neutral segment in a sequence of N monomers is
proportional to N/(n^2), while the mean number of neutral segments increases as
sqrt(N). The polyampholyte in the ground state within our model is found to
have an average linear size proportional to sqrt(N), and an average surface
area proportional to N^(2/3).Comment: 8 two-column pages. 5 eps figures. RevTex. Submitted to Phys. Rev.
Theta-point universality of polyampholytes with screened interactions
By an efficient algorithm we evaluate exactly the disorder-averaged
statistics of globally neutral self-avoiding chains with quenched random charge
in monomer i and nearest neighbor interactions on
square (22 monomers) and cubic (16 monomers) lattices. At the theta transition
in 2D, radius of gyration, entropic and crossover exponents are well compatible
with the universality class of the corresponding transition of homopolymers.
Further strong indication of such class comes from direct comparison with the
corresponding annealed problem. In 3D classical exponents are recovered. The
percentage of charge sequences leading to folding in a unique ground state
approaches zero exponentially with the chain length.Comment: 15 REVTEX pages. 4 eps-figures . 1 tabl
From Collapse to Freezing in Random Heteropolymers
We consider a two-letter self-avoiding (square) lattice heteropolymer model
of N_H (out ofN) attracting sites. At zero temperature, permanent links are
formed leading to collapse structures for any fraction rho_H=N_H/N. The average
chain size scales as R = N^{1/d}F(rho_H) (d is space dimension). As rho_H -->
0, F(rho_H) ~ rho_H^z with z={1/d-nu}=-1/4 for d=2. Moreover, for 0 < rho_H <
1, entropy approaches zero as N --> infty (being finite for a homopolymer). An
abrupt decrease in entropy occurs at the phase boundary between the swollen (R
~ N^nu) and collapsed region. Scaling arguments predict different regimes
depending on the ensemble of crosslinks. Some implications to the protein
folding problem are discussed.Comment: 4 pages, Revtex, figs upon request. New interpretation and emphasis.
Submitted to Europhys.Let
Folding of the Triangular Lattice with Quenched Random Bending Rigidity
We study the problem of folding of the regular triangular lattice in the
presence of a quenched random bending rigidity + or - K and a magnetic field h
(conjugate to the local normal vectors to the triangles). The randomness in the
bending energy can be understood as arising from a prior marking of the lattice
with quenched creases on which folds are favored. We consider three types of
quenched randomness: (1) a ``physical'' randomness where the creases arise from
some prior random folding; (2) a Mattis-like randomness where creases are
domain walls of some quenched spin system; (3) an Edwards-Anderson-like
randomness where the bending energy is + or - K at random independently on each
bond. The corresponding (K,h) phase diagrams are determined in the hexagon
approximation of the cluster variation method. Depending on the type of
randomness, the system shows essentially different behaviors.Comment: uses harvmac (l), epsf, 17 figs included, uuencoded, tar compresse
THERMODYNAMICS OF A BROWNIAN BRIDGE POLYMER MODEL IN A RANDOM ENVIRONMENT
We consider a directed random walk making either 0 or moves and a
Brownian bridge, independent of the walk, conditioned to arrive at point on
time . The Hamiltonian is defined as the sum of the square of increments of
the bridge between the moments of jump of the random walk and interpreted as an
energy function over the bridge connfiguration; the random walk acts as the
random environment. This model provides a continuum version of a model with
some relevance to protein conformation. The thermodynamic limit of the specific
free energy is shown to exist and to be self-averaging, i.e. it is equal to a
trivial --- explicitly computed --- random variable. An estimate of the
asymptotic behaviour of the ground state energy is also obtained.Comment: 20 pages, uuencoded postscrip
Self-consistent variational theory for globules
A self-consistent variational theory for globules based on the uniform
expansion method is presented. This method, first introduced by Edwards and
Singh to estimate the size of a self-avoiding chain, is restricted to a good
solvent regime, where two-body repulsion leads to chain swelling. We extend the
variational method to a poor solvent regime where the balance between the
two-body attractive and the three-body repulsive interactions leads to
contraction of the chain to form a globule. By employing the Ginzburg
criterion, we recover the correct scaling for the -temperature. The
introduction of the three-body interaction term in the variational scheme
recovers the correct scaling for the two important length scales in the globule
- its overall size , and the thermal blob size . Since these two
length scales follow very different statistics - Gaussian on length scales
, and space filling on length scale - our approach extends the
validity of the uniform expansion method to non-uniform contraction rendering
it applicable to polymeric systems with attractive interactions. We present one
such application by studying the Rayleigh instability of polyelectrolyte
globules in poor solvents. At a critical fraction of charged monomers, ,
along the chain backbone, we observe a clear indication of a first-order
transition from a globular state at small , to a stretched state at large
; in the intermediate regime the bistable equilibrium between these two
states shows the existence of a pearl-necklace structure.Comment: 7 pages, 1 figur
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