Towards the Optimal Use of Machine Learning Algorithms in Text Mining: A Quick Review

This paper aims to provide a quick review to jump-start the research in the field of text mining where Machine Learning (ML) algorithms have been used and several accomplishments have been reported by the research community. There are different categories of text mining, and the implementation of ML algorithms and techniques have been supported in the literature to give promising results. However, in this area of study, most of the research activities in terms of time and efforts are consumed during the initial stages where implementations and experiments are carried out to evaluate various combinations. The accomplishments in this field can be further advanced by presenting early investigations concisely and analytically. Thus, the benefits of this paper are threefold: first, it will provide a platform for the new researchers to start quickly with a shorter literature review and knowing more precisely about the combinations of text mining and ML; secondly, clear analysis has been presented about the text mining categories where the performance of ML algorithms have been reported successful; and lastly, the problems have been identified for which the algorithms were used in various studies. This will enable the new researchers to directly target the problem instead of implementing the existing techniques. With the help of well-structured questions, the results are more analytical and present multidimensional views to this research issue. Main findings include that ML has been widely used in document classification and Support Vector Machine (SVM) is the most successful algorithm reported

Relative contribution of nitrogen absorption, remobilization, and partitioning to the ear during grain filling in chinese winter wheat

Knowledge of the function of the ear as a key organ in the uptake, remobilization and partitioning of nitrogen is essential for understanding its contribution to grain filling and thus guiding future breeding strategies. In this work, four Chinese winter wheat genotypes were grown on a 15N-enriched nutrient solution. N absorption and further remobilization to the flag leaf, the ear and the mature grains were calculated via the 15N atom%excess. The results indicated that the high yields of the Chinese wheat genotype were determined by higher grain numbers per ear, with greater plant height and a larger ear size, while the thousand-grain weight did not affect grain yield. In the mature grains, 66.7% of total N was remobilized from the pre-anthesis accumulation in the biomass, while the remaining 33.3% was derived from the N taken up during post-anthesis. From anthesis to 2 weeks after the anthesis stage, the flag leaf remobilized 3.67mg of N outwards and the ear remobilized 3.87mg of N inwards from the pre-anthesis accumulation in each plant. The positive correlation between ear Nrem and grain Nrem indicated that the ear was an important organ for providing N to the grain, whereas the remobilized N stream from the leaves was not correlated with grain Nrem, thus indicating that flag leaf N was not translocated directly to the grain. The grain Nrem was negatively correlated with the ear N concentration throughout grain filling, which suggested that higher-yielding genotypes had better sink activity in the ear, while Rubisco played a critical role in N deposition. Therefore, to improve yield potential in wheat, the N accumulation in the ear and the subsequent remobilization of that stored N to the grains should be considered. N accumulation and remobilization in the ear may at least be valuable for Chinese breeding programs that aim at optimizing the sink/source balance to improve grain filling

Comparative Study of the Effects of Salinity on Growth, Gas Exchange, N Accumulation and Stable Isotope Signatures of Forage Oat (Avena sativa L.) Genotypes

Identifying suitable salt stress-tolerant phenotypes based on their agronomic and physiological traits remains a herculean task in forage-type oat (Avena sativa L.) breeding. This study examined the responses of six forage-type oat cultivars under four levels of saline stress over the vegetative growth cycle. Crop growth, water status-related traits and nitrogen status-related traits were analyzed in different plant parts to evaluate effective approaches for identifying salt tolerance. Plant biomass, height, tiller number and culm thickness changed substantially during salinity, but they were not precise enough for use in estimating genotypic salinity tolerance during long-term stress. Genotypes bearing larger numbers of tillers showed greater sensitivity to salinity due to its effects on biomass loss. Tolerant genotypes exhibited higher relative shoot biomass together with higher water use efficiency. The concentrations of Na+, K+ and their ratio, combined with the δ13C in shoots and roots were effective indicators for estimating tolerant genotypes through better water maintenance. N concentrations of shoots were the most efficient for evaluating genotypic tolerance. Low nitrate reductase (NR) and glutamine synthetase (GS) activity might be key factors limiting N accumulation. Chlorophyll (Chl) content and net photosynthetic rate, as well as stomatal conductance and evaporation, were useful for identifying salinity tolerance physiological mechanisms, but the effectiveness was low for genotypic tolerance testing for forage type oats due to the interaction between genotypes and salinity levels. The selection of high salinity-tolerant genotypes should focus on genotypes with photosynthetic resilience to salt, followed by high N metabolism (higher NR and GS activities) to ensure accumulation of more N in the shoot dry matter

Assessing nature of competition in banking sector of Pakistan

This study examines the nature of competition in banking sector of Pakistan and assesses whether the banking sector is in long-run equilibrium or not. The study uses annual panel data for a sample of 30 banks, over the period 2007–2015 by employing Rosse and Panzar (1977) methodology. The findings show that banking sector of Pakistan is operating under characteristics of monopolistic competition. The findings further show that the equilibrium hypothesis is rejected for the banking sector over the period of analysis. The current study is expected to benefit policymakers, banking sector itself and the country's central bank. The findings confirm that massive deregulations and financial liberalization has contributed positively and has improved competitive condition of the banking sector that is expected to improve further in the future

Transcriptome Sequencing and Comparative Analysis of Piptoporus betulinus in Response to Birch Sawdust Induction

Piptoporus betulinus, a brown-rot parasitic fungus of birch trees (Betula species), has been used as a common anti-parasitic and antibacterial agent. The lack of genetic resource data for P. betulinus has limited the exploration of this species. In this present study, we used Illumina Hiseq 2500 technology to examine the transcriptome assembly of P. betulinus in response to birch sawdust induction. By de novo assembly, 21,882 non-redundant unigenes were yielded, and 21,255 (97.1%) were annotated with known gene sequences. A total of 340 responsive unigenes were highly homologous with putative lignocellulose-degrading enzyme candidates. Additionally, 86 unigenes might be involved in the chemical reaction in xenobiotics biodegradation and metabolism, which suggests that this fungus could convert xenobiotic materials and has the potential ability to clean up environmental pollutants. To our knowledge, this was the first study on transcriptome sequencing and comparative analysis of P. betulinus, which provided a better understanding of molecular mechanisms underlying birch sawdust induction and identified lignocelluloses degrading enzymes

Yield, Agronomic and Forage Quality Traits of Different Quinoa (Chenopodium quinoa Willd.) Genotypes in Northeast China

Quinoa (Chenopodium quinoa Willd.) grain is well known as a source of nutritious human food, but the nutritional properties of quinoa as animal fodder has not been well explored. Fifteen quinoa accessions were assessed for grain and forage yields, and morphological and quality traits during anthesis and grain filling, with the aim of selecting superior genotypes for greater production and quality traits that are well adapted to northeastern China. Variations were significant among the tested genotypes for all traits. The highest grain weight was recorded in Rainbow (27.51 g plant−1), followed by the local Chinese genotypes Longli 3, YY28 and Mengli 1. Correlation analysis revealed a significant positive association of grain yield with branches and a negative association with culm thickness and inflorescence length, whereas more branches and moderate plant height were the main yield components affecting yield. Forage shoot weight was 37.2–81.6 g plant−1, with JQ3 and ZQ1 exhibiting the highest yields. Forage yield was strongly and positively correlated with most of the morphological traits, except plant height, and was negatively associated with chlorophyll content and the fresh/dry matter ratio. Quality traits and the neutral detergent fiber (NDF) and acid detergent fiber (ADF) contents of quinoa were significantly lower than alfalfa (Medicago sativa L.), oats (Avena sativa L.) or Leymus chinensis (Trin.) Tzvel, and the crude protein (CP) content was significantly higher than all three species, reaching above 20%. The saponin content of the whole plant was higher during anthesis than during grain filling. In conclusion, genotypes having more branches and shorter and more compact main inflorescences achieved higher grain yields, whereas genotypes possessing thick stems, more branches and moderate plant height produced more forage. Hence, the results indicate that superior quinoa genotypes have great potential to solve fodder shortages in China

Relative contribution of nitrogen absorption, remobilization, and partitioning to the ear during grain filling in chinese winter wheat

Knowledge of the function of the ear as a key organ in the uptake, remobilization and partitioning of nitrogen is essential for understanding its contribution to grain filling and thus guiding future breeding strategies. In this work, four Chinese winter wheat genotypes were grown on a 15N-enriched nutrient solution. N absorption and further remobilization to the flag leaf, the ear and the mature grains were calculated via the 15N atom%excess. The results indicated that the high yields of the Chinese wheat genotype were determined by higher grain numbers per ear, with greater plant height and a larger ear size, while the thousand-grain weight did not affect grain yield. In the mature grains, 66.7% of total N was remobilized from the pre-anthesis accumulation in the biomass, while the remaining 33.3% was derived from the N taken up during post-anthesis. From anthesis to 2 weeks after the anthesis stage, the flag leaf remobilized 3.67mg of N outwards and the ear remobilized 3.87mg of N inwards from the pre-anthesis accumulation in each plant. The positive correlation between ear Nrem and grain Nrem indicated that the ear was an important organ for providing N to the grain, whereas the remobilized N stream from the leaves was not correlated with grain Nrem, thus indicating that flag leaf N was not translocated directly to the grain. The grain Nrem was negatively correlated with the ear N concentration throughout grain filling, which suggested that higher-yielding genotypes had better sink activity in the ear, while Rubisco played a critical role in N deposition. Therefore, to improve yield potential in wheat, the N accumulation in the ear and the subsequent remobilization of that stored N to the grains should be considered. N accumulation and remobilization in the ear may at least be valuable for Chinese breeding programs that aim at optimizing the sink/source balance to improve grain filling

Phytochemical Screening and Antimicrobial Activities of Stem, Leaves and Fruit Extracts of Viscum album L.

The current research was conducted to study the qualitative analysis and antimicrobial activity of different extracts of Viscum. album L. Screening of Viscum album for their chemicals was led by familiar qualitative procedures, which exposed the existence of a number of bioactive compounds including alkaloids, saponins, tannins, flavonoids, terpenoids, steroids, reducing sugar and phenols. The antimicrobial activities were investigated by disc diffusion method. Investigation of the data discovered that all of the five extracts of Viscum album stems, leaves and fruit showed diverse range of antimicrobial activities. Ethyl acetate, butanol, water and crude extracts showed maximum inhibitory effects against all the microbial species. Especially, Gram-positive bacterial and fungal pathogen. The most liable, gram-positive bacteria were Bacillus subtilis, Bacillus atrophaeus and Staphylococcus aureus, which were repressed by all extracts except n-hexane. The most susceptible gram-negative bacterial species were Escherichia coli, Erwinia carotovora and Agrobacterium tumefaciens where as the most resilient gram-negative bacterium was Salmonella typhi. The results have also supported the practice of aqueous extract were found to be in effect against Salmonella typhi and Escherichia coli. Thus, our findings have provided support for the use of Viscum album stems, leaves and fruit in traditional medicines

FGFR Pathway Inhibition in Gastric Cancer: The Golden Era of an Old Target?

Gastric cancer (GC) is the third leading cause of cancer-associated death worldwide. The majority of patients are diagnosed at an advanced/metastatic stage of disease due to a lack of specific symptoms and lack of screening programs, especially in Western countries. Thus, despite the improvement in GC therapeutic opportunities, the survival is disappointing, and the definition of the optimal treatment is still an unmet need. Novel diagnostic techniques were developed in clinical trials in order to characterize the genetic profile of GCs and new potential molecular pathways, such as the Fibroblast Growth Factor Receptor (FGFR) pathway, were identified in order to improve patient’s survival by using target therapies. The aim of this review is to summarize the role and the impact of FGFR signaling in GC and to provide an overview regarding the potential effectiveness of anti-FGFR agents in GC treatment in the context of precision medicine