A comparative study of interaction of tetracycline with several proteins using time resolved anisotropy, phosphorescence, docking and FRET

A comparative study of the interaction of an antibiotic Tetracycline hydrochloride (TC) with two albumins, Human serum albumin (HSA) and Bovine serum albumin (BSA) along with Escherichia Coli Alkaline Phosphatase (AP) has been presented exploiting the enhanced emission and anisotropy of the bound drug. The association constant at 298 K is found to be two orders of magnitude lower in BSA/HSA compared to that in AP with number of binding site being one in each case. Fluorescence resonance energy transfer (FRET) and molecular docking studies have been employed for the systems containing HSA and BSA to find out the particular tryptophan (Trp) residue and the other residues in the proteins involved in the binding process. Rotational correlation time (θc) of the bound TC obtained from time resolved anisotropy of TC in all the protein-TC complexes has been compared to understand the binding mechanism. Low temperature (77 K) phosphorescence (LTP) spectra of Trp residues in the free proteins (HSA/BSA) and in the complexes of HSA/BSA have been used to specify the role of Trp residues in FRET and in the binding process. The results have been compared with those obtained for the complex of AP with TC. The photophysical behaviour (viz., emission maximum, quantum yield, lifetime and θc) of TC in various protic and aprotic polar solvents has been determined to address the nature of the microenvironment of TC in the protein-drug complexes

Protein-Mediated Efficient Synergistic “Antenna Effect” in a Ternary System in D₂O Medium

A ternary system consisting of a protein, catechin (either + or – epimer), and Tb­(III) in suitable aqueous buffer medium at physiological pH (= 6.8) has been shown to exhibit highly efficient “antenna effect”. Steady state and time-resolved emission studies of each component in the binary complexes (protein with Tb­(III) and (+)- or (−)-catechin with Tb­(III)) and the ternary systems along with the molecular docking studies reveal that the efficient sensitization could be ascribed to the effective shielding of microenvironment of Tb­(III) from O–H oscillator and increased Tb–C (+/−) interaction in the ternary systems in aqueous medium. The ternary system exhibits protein-mediated efficient antenna effect in D₂O medium due to synergistic ET from both the lowest ππ* triplet state of Trp residue in protein and that of catechin apart from protection of the Tb­(III) environment from matrix vibration. The simple system consisting of (+)- or (−)-catechin and Tb­(III) in D₂O buffer at pH 6.8 has been prescribed to be a useful biosensor

Interaction of multitryptophan protein with drug: An insight into the binding mechanism and the binding domain by time resolved emission, anisotropy, phosphorescence and docking

The interaction of antibiotic Tetracycline hydrochloride (TC) with Alkaline Phosphatase (AP) from Escherichia coli, an important target enzyme in medicinal chemistry, having tryptophan (Trp) residues at 109, 220 and 268 has been studied using the steady state and time resolved emission of the protein and the enhanced emission of the bound drug. The association constant at 298 K (≈10⁶ [M]⁻¹) and the number of binding site (= 1) were estimated using the quenched Trp emission of AP, the enhanced emission and the anisotropy of the bound drug. The values of ΔH⁰ and ΔS⁰ are indicative of electrostatic and H-bonding interaction. The low temperature phosphorescence of free AP and the protein- drug complex and molecular docking comprehensively prove the specific involvement of partially exposed Trp 220 in the binding process without affecting Trp 109 and Trp 268. The Förster energy transfer (ET) efficiency and the rate constant from the Trp residue to TC = 0.51 and ≈10⁸ s⁻¹ respectively. Arg 199, Glu 219, Trp 220, Lys 223, Ala 231, Arg 232 and Tyr 234 residues are involved in the binding process. The motional restriction of TC imposed by nearby residues is reflected in the observed life time and the rotational correlation time of bound TC

Pentanuclear 3d-4f heterometal complexes of MII3LnIII2 (M = Ni, Cu, Zn and Ln = Nd, Gd and Tb) combinations: syntheses, structures, magnetism and photoluminescence properties

A new family of pentanuclear 3d-4f heterometal complexes of general composition [LnIII2(MIIL)3(μ3-O)3H](ClO4)·xH2O (1-5) [Ln = Nd, M = Zn, 1; Nd, Ni, 2; Nd, Cu, 3; Gd, Cu, 4; Tb, Cu, 5] have been synthesized in moderate yields (50-60%) following a self-assembly reaction involving the hexadentate phenol-based ligand, viz., N,N-bis(2-hydroxy-3-methoxy-5-methylbenzyl)-N′,N′-diethylethylenediamine (H2L). Single-crystal X-ray diffraction analyses have been used to characterize these complexes. The compounds are all isostructural, having a 3-fold axis of symmetry that passes through the 4f metal centers. The [MIIL] units in these complexes are acting as bis-bidentate metalloligands and, together with μ3-oxido bridging ligands, complete the slightly distorted monocapped square antiprismatic nine-coordination environment around the 4f metal centers. The cationic complexes also contain a H+ ion that occupies the central position at the 3-fold axis. Magnetic properties of the copper(II) complexes (3-5) show a changeover from antiferromagnetic in 3 to ferromagnetic 3d-4f interactions in 4 and 5. For the isotropic CuII-GdIII compound 4, the simulation of magnetic data provides very weak Cu-Gd (J1 = 0.57 cm-1) and Gd-Gd exchange constants (J2 = 0.14 cm-1). Compound 4 is the only member of this triad, showing a tail of an out-of-phase signal in the ac susceptibility measurement. A large-spin ground state (S = 17/2) and a negative value of D (-0.12 cm-1) result in a very small barrier (8 cm-1) for this compound. Among the three NdIII2MII3 (M = ZnII, NiII, and CuII) complexes, only the ZnII analogue (1) displays an NIR luminescence due to the 4F3/2 → 4I11/2 transition in NdIII when excited at 290 nm. The rest of the compounds do not show such NdIII/TbIII-based emission. The paramagnetic CuII and NiII ions quench the fluorescence in 2-5 and thereby lower the population of the triplet stat

Pentanuclear 3d–4f Heterometal Complexes of M^II₃Ln^III₂ (M = Ni, Cu, Zn and Ln = Nd, Gd, Tb) Combinations: Syntheses, Structures, Magnetism, and Photoluminescence Properties

A new family of pentanuclear 3d–4f heterometal complexes of general composition [Ln^III₂(M^IIL)₃(μ₃-O)₃H]­(ClO₄)·<i>x</i>H₂O (<b>1</b>–<b>5</b>) [Ln = Nd, M = Zn, <b>1</b>; Nd, Ni, <b>2</b>; Nd, Cu, <b>3</b>; Gd, Cu, <b>4</b>; Tb, Cu, <b>5</b>] have been synthesized in moderate yields (50–60%) following a self-assembly reaction involving the hexadentate phenol-based ligand, viz., <i>N</i>,<i>N</i>-bis­(2-hydroxy-3-methoxy-5-methylbenzyl)-<i>N</i>^′,<i>N</i>^′-diethylethylenediamine (H₂L). Single-crystal X-ray diffraction analyses have been used to characterize these complexes. The compounds are all isostructural, having a 3-fold axis of symmetry that passes through the 4f metal centers. The [M^IIL] units in these complexes are acting as bis-bidentate metalloligands and, together with μ₃-oxido bridging ligands, complete the slightly distorted monocapped square antiprismatic nine-coordination environment around the 4f metal centers. The cationic complexes also contain a H⁺ ion that occupies the central position at the 3-fold axis. Magnetic properties of the copper­(II) complexes (<b>3</b>–<b>5</b>) show a changeover from antiferromagnetic in <b>3</b> to ferromagnetic 3d–4f interactions in <b>4</b> and <b>5</b>. For the isotropic Cu^II–Gd^III compound <b>4</b>, the simulation of magnetic data provides very weak Cu–Gd (<i>J</i>₁ = 0.57 cm^–1) and Gd–Gd exchange constants (<i>J</i>₂ = 0.14 cm^–1). Compound <b>4</b> is the only member of this triad, showing a tail of an out-of-phase signal in the ac susceptibility measurement. A large-spin ground state (<i>S</i> = 17/2) and a negative value of <i>D</i> (−0.12 cm^–1) result in a very small barrier (8 cm^–1) for this compound. Among the three Nd^III₂M^II₃ (M = Zn^II, Ni^II, and Cu^II) complexes, only the Zn^II analogue (<b>1</b>) displays an NIR luminescence due to the ⁴F_3/2 → ⁴I_11/2 transition in Nd^III when excited at 290 nm. The rest of the compounds do not show such Nd^III/Tb^III-based emission. The paramagnetic Cu^II and Ni^II ions quench the fluorescence in <b>2</b>–<b>5</b> and thereby lower the population of the triplet state

Plot of φ (A) and <τ> (B) against (I) dielectric constant (ε), (II) solvent polarizability parameter (π*), (III) Hydrogen bond donating ability (α) of different solvents, (1) DMSO, (2) DMF, (3) EG, (4) EtOH, (5) i-PrOH.

<p>Plot of φ (A) and <τ> (B) against (I) dielectric constant (ε), (II) solvent polarizability parameter (π*), (III) Hydrogen bond donating ability (α) of different solvents, (1) DMSO, (2) DMF, (3) EG, (4) EtOH, (5) i-PrOH.</p

The Energy Transfer Efficiency and The Rate Constant of Protein-TC Complexes at 298 K.

a<p>Ref <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0060940#pone.0060940-Anand1" target="_blank">[66]</a>.</p>b<p>Considering the distance from indole N of Trp to O attached with 10-C of TC.</p

Distances and of Tryptophan Residues of Different Proteins from TC Changes in Accessible Surface Area (ΔASA) of Tryptophan Obtained by the Docking Studies.

<p>Distances and of Tryptophan Residues of Different Proteins from TC Changes in Accessible Surface Area (ΔASA) of Tryptophan Obtained by the Docking Studies.</p

Steady State and Time Resolved Emission of TC in Various Solvents.

<p>(<b>A</b>) Fluorescence spectra of TC (25 µM) at 298 K in (1) water, (2) ethanol (EtOH), (3) isopropanol (iPrOH), (4) ethylene glycol (EG), (5) dimethylformamide (DMF), (6) dimethyl sulphoxide (DMSO); λ_exc = 370 nm; excitation and emission band pass = 10 nm and 5 nm respectively. (<b>B</b>) Fluorescence decay of TC (25 µM) at 298 K in (B) EtOH, iPr-OH, EG, DMF, DMSO; λexc = 370 nm; excitation and emission bandpass = 10 nm each.</p

The Changes in Accessible Surface Area (ΔASA)^a of the Residues of Serum Albumins after Complexed with Tetracycline.

a<p>ΔASA_i = ASAⁱ_HSA/BSA – ASAⁱ_{HSA/BSA – TC complex.}</p