Proinflammatory Markers in Prediction of Posttraumatic Psychological Symptoms: A Prospective Cohort Study

Introduction. Posttraumatic psychopathology (PTP) describes the spectrum of conditions that can complicate the recovery from commonly occurring musculoskeletal trauma. There is a clear association with the activation of the hypothalamic-pituitary-adrenal axis (HPAA), and we wished to examine the predictive value of proinflammatory markers of the HPAA and of the GABA, which acts as an inhibitory regulator. Methods. Levels of proinflammatory markers and GABA were measured in 84 patients who had suffered musculoskeletal injuries requiring hospitalisation. PTP was assessed by the use of the General Health Questionnaire (GHQ) at presentation and again at two- and six-month reviews. Results. Significant psychological disturbance was noted in 39% of patients at two months and falling back to 18% by six months. There was no correlation between any of the markers tested at presentation and PTP at follow-up. Discussion. The HPAA response to trauma and the development of PTP are extremely complex. It is unlikely that a simple blood assay will provide significant predictive information, while incident specific information and patient perception are of more practical use

The richness dependence of galaxy cluster correlations: Results from a redshift survey of rich APM clusters

We analyse the spatial clustering properties of a new catalogue of very rich galaxy clusters selected from the APM Galaxy Survey. These clusters are of comparable richness and space density to Abell Richness Class $\geq 1$ clusters, but selected using an objective algorithm from a catalogue demonstrably free of artificial inhomogeneities. Evaluation of the two-point correlation function $\xi_{cc}(r)$ for the full sample and for richer subsamples reveals that the correlation amplitude is consistent with that measured for lower richness APM clusters and X-ray selected clusters. We apply a maxmimum likelihood estimator to find the best fitting slope and amplitude of a power law fit to $\xi_{cc}(r)$, and to estimate the correlation length $r_{0}$ (the value of $r$ at which $\xi_{cc}(r)$ is equal to unity). For clusters with a mean space density of 1.6\times 10^{-6}\hmpccc (equivalent to the space density of Abell Richness $\geq 2$ clusters), we find r_{0}=21.3^{+11.1}_{-9.3} \hmpc (95% confidence limits). This is consistent with the weak richness dependence of $\xi_{cc}(r)$ expected in Gaussian models of structure formation. In particular, the amplitude of $\xi_{cc}(r)$ at all richnesses matches that of $\xi_{cc}(r)$ for clusters selected in N-Body simulations of a low density Cold Dark Matter model.Comment: MNRAS submitted, 9 pages, LaTeX (mn), 7 figures. Also available at http://www-astronomy.mps.ohio-state.edu/~racc

Quantifying flow regimes in a Greenland glacial fjord using iceberg drifters

Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 41 (2014): 8411–8420, doi:10.1002/2014GL062256.Large, deep-keeled icebergs are ubiquitous in Greenland's outlet glacial fjords. Here we use the movement of these icebergs to quantify flow variability in Sermilik Fjord, southeast Greenland, from the ice mélange through the fjord to the shelf. In the ice mélange, a proglacial mixture of sea ice and icebergs, we find that icebergs consistently track the glacier speed, with slightly faster speeds near terminus and episodic increases due to calving events. In the fjord, icebergs accurately capture synoptic circulation driven by both along-fjord and along-shelf winds. Recirculation and in-/out-fjord variations occur throughout the fjord more frequently than previously reported, suggesting that across-fjord velocity gradients cannot be ignored. Once on the shelf, icebergs move southeastward in the East Greenland Coastal Current, providing wintertime observations of this freshwater pathway.Funding for this study was provided by National Science Foundation grants OCE-1130008 and ARC-0909274, and by the University of Oregon.2015-06-1

Quantifying flow regimes in a Greenland glacial fjord using iceberg drifters

Large, deep-keeled icebergs are ubiquitous in Greenland's outlet glacial fjords. Here we use the movement of these icebergs to quantify flow variability in Sermilik Fjord, southeast Greenland, from the ice mélange through the fjord to the shelf. In the ice mélange, a proglacial mixture of sea ice and icebergs, we find that icebergs consistently track the glacier speed, with slightly faster speeds near terminus and episodic increases due to calving events. In the fjord, icebergs accurately capture synoptic circulation driven by both along-fjord and along-shelf winds. Recirculation and in-/out-fjord variations occur throughout the fjord more frequently than previously reported, suggesting that across-fjord velocity gradients cannot be ignored. Once on the shelf, icebergs move southeastward in the East Greenland Coastal Current, providing wintertime observations of this freshwater pathway.Funded by The National Science Foundation. Grant Numbers: OCE-1130008, ARC-0909274 and The University of Oregon

Jet-Induced Emission-Line Nebulosity and Star Formation in the High-Redshift Radio Galaxy 4C41.17

The high redshift radio galaxy 4C41.17 consists of a powerful radio source in which previous work has shown that there is strong evidence for jet-induced star formation along the radio axis. We argue that nuclear photoionization is not responsible for the excitation of the emission line clouds and we construct a jet-cloud interaction model to explain the major features revealed by the data. The interaction of a high-powered jet with a dense cloud in the halo of 4C41.17 produces shock-excited emission-line nebulosity through ~1000 km/s shocks and induces star formation. The CIII to CIV line ratio and the CIV luminosity emanating from the shock, imply that the pre-shock density in the line-emitting cloud is high enough (~1-10 cm^-3) that shock initiated star formation could proceed on a timescale of order a few x 10^6 yrs, well within the estimated dynamical age of the radio source. Broad (FWHM ~ 100 - 1400 km/s) emission lines are attributed to the disturbance of the gas cloud by a partial bow--shock and narrow emission lines (FWHM ~ 500 - 650 km/s) (in particular CIV) arise in precursor emission in relatively low metallicity gas. The implied baryonic mass ~ 8 \times 10^{10} solar masses of the cloud is high and implies that Milky Way size condensations existed in the environments of forming radio galaxies at a redshift of 3.8. Our interpretation of the data provides a physical basis for the alignment of the radio, emission-line and UV continuum images in some of the highest redshift radio galaxies and the analysis presented here may form a basis for the calculation of densities and cloud masses in other high redshift radio galaxies.Comment: 18 pages, 5 figures; uses astrobib.sty and aaspp4.sty. Better versions of figures available via anonymous from ftp://mso.anu.edu.au:pub/pub/geoff/4C41.1

Drug-resistant genotypes and multi-clonality in Plasmodium falciparum analysed by direct genome sequencing from peripheral blood of malaria patients.

Naturally acquired blood-stage infections of the malaria parasite Plasmodium falciparum typically harbour multiple haploid clones. The apparent number of clones observed in any single infection depends on the diversity of the polymorphic markers used for the analysis, and the relative abundance of rare clones, which frequently fail to be detected among PCR products derived from numerically dominant clones. However, minority clones are of clinical interest as they may harbour genes conferring drug resistance, leading to enhanced survival after treatment and the possibility of subsequent therapeutic failure. We deployed new generation sequencing to derive genome data for five non-propagated parasite isolates taken directly from 4 different patients treated for clinical malaria in a UK hospital. Analysis of depth of coverage and length of sequence intervals between paired reads identified both previously described and novel gene deletions and amplifications. Full-length sequence data was extracted for 6 loci considered to be under selection by antimalarial drugs, and both known and previously unknown amino acid substitutions were identified. Full mitochondrial genomes were extracted from the sequencing data for each isolate, and these are compared against a panel of polymorphic sites derived from published or unpublished but publicly available data. Finally, genome-wide analysis of clone multiplicity was performed, and the number of infecting parasite clones estimated for each isolate. Each patient harboured at least 3 clones of P. falciparum by this analysis, consistent with results obtained with conventional PCR analysis of polymorphic merozoite antigen loci. We conclude that genome sequencing of peripheral blood P. falciparum taken directly from malaria patients provides high quality data useful for drug resistance studies, genomic structural analyses and population genetics, and also robustly represents clonal multiplicity

The terminal enzymes of (bacterio)chlorophyll biosynthesis.

(Bacterio)chlorophylls are modified tetrapyrroles that are used by phototrophic organisms to harvest solar energy, powering the metabolic processes that sustain most of the life on Earth. Biosynthesis of these pigments involves enzymatic modification of the side chains and oxidation state of a porphyrin precursor, modifications that differ by species and alter the absorption properties of the pigments. (Bacterio)chlorophylls are coordinated by proteins that form macromolecular assemblies to absorb light and transfer excitation energy to a special pair of redox-active (bacterio)chlorophyll molecules in the photosynthetic reaction centre. Assembly of these pigment-protein complexes is aided by an isoprenoid moiety esterified to the (bacterio)chlorin macrocycle, which anchors and stabilizes the pigments within their protein scaffolds. The reduction of the isoprenoid 'tail' and its addition to the macrocycle are the final stages in (bacterio)chlorophyll biosynthesis and are catalysed by two enzymes, geranylgeranyl reductase and (bacterio)chlorophyll synthase. These enzymes work in conjunction with photosynthetic complex assembly factors and the membrane biogenesis machinery to synchronize delivery of the pigments to the proteins that coordinate them. In this review, we summarize current understanding of the catalytic mechanism, substrate recognition and regulation of these crucial enzymes and their involvement in thylakoid biogenesis and photosystem repair in oxygenic phototrophs