Organic farming without fossil fuels - life cycle assessment of two Swedish cases

Organic agriculture is dependent on fossil fuels, just like conventional agriculture, but this can be reduced by the use of on-farm biomass resources. The energy efficiency and environmental impacts of different alternatives can be assessed by life cycle assessment (LCA), which we have done in this project. Swedish organic milk production can become self-sufficient in energy by using renewable sources available on the farm, with biogas from manure as the main energy source. Thereby greenhouse gas (GHG) emissions from the production system can be reduced, both by substituting fossil fuels and by reducing methane emissions from manure. The arable organic farm studied in the project could be self-sufficient in energy by using the residues available in the crop rotation. Because of soil carbon losses, the greenhouse gas emission savings were lower with the use of straw ethanol, heat and power (9%) than by using ley for biogas production (35%). In this research project, the system boundaries were set at energy self-sufficiency at farm or farm-cluster level. Heat and fuel were supplied as needed, and electricity production was equal to use on an annual basis. In practice, however, better resource efficiency can be achieved by making full use of available energy infrastructure, and basing production on resource availability and economic constraints, rather than a narrow self-sufficiency approach

Quantitative evaluation of ontology design patterns for combining pathology and anatomy ontologies.

Data are increasingly annotated with multiple ontologies to capture rich information about the features of the subject under investigation. Analysis may be performed over each ontology separately, but recently there has been a move to combine multiple ontologies to provide more powerful analytical possibilities. However, it is often not clear how to combine ontologies or how to assess or evaluate the potential design patterns available. Here we use a large and well-characterized dataset of anatomic pathology descriptions from a major study of aging mice. We show how different design patterns based on the MPATH and MA ontologies provide orthogonal axes of analysis, and perform differently in over-representation and semantic similarity applications. We discuss how such a data-driven approach might be used generally to generate and evaluate ontology design patterns.National Institutes of Health (AG038070-05, for the Shock Aging Center) King Abdullah University of Science and Technology (KAUST) Office of Sponsored Research (OSR) under Award No. URF/1/3454-01-01 and FCC/1/1976-08-01. King Abdullah University of Science and Technology (KAUST) Office of Sponsored Research (OSR) under Award No. FCS/1/3657-02-0

A Unique, Neurologically Integrated Approach Designed to Teach Letter Sounds and Formations

The purpose of this article is to present an integrated alphabetic approach that simultaneously teaches letter sounds and formations. We share with you the research that supports this integrated approach and present the procedures to implement this approach. Further, we document the effect of using this new integrated alphabet approach on the accuracy with which students learned to produce letter sounds and formations in two situations: first grade classrooms in a school in a Midwest suburb and in an inner city post-kindergarten summer school. Also, teacher comments and student voices are included. Results show that students who received integrated alphabet instruction reduced their sound and letter formation errors. Also, teachers advocate for one approach that simultaneously teaches phonics and handwriting. The findings of this study support the value of employing a methodology that combines instruction in letter sounds and letter formations through a neurologically integrated system

Cambrian Trilobites From the Nounan Dolomite and Lower St. Charles Formation (Upper Marjuman to Lower Sunwaptan; Miaolingian to Furongian Series), Smithfield Canyon, Northern Utah

The trilobite faunas that occur with the Steptoean Positive Isotope Carbon Excursion (SPICE) at Smithfield Canyon, Utah, have been reported, but not illustrated. Given the importance of the SPICE at this section for international correlations, the trilobites from new collections from the upper Nounan Dolomite to lower St. Charles Formation at Smithfield Canyon are reported herein and integrated with the previously reported taxa. Trilobite assemblages indicate that the upper Cedaria to the Ellipsocephaloides biozones (Miaolingian Series, Guzhangian Stage to Furongian Series, Jiangshanian Stage) are present stratigraphically below or above the SPICE. Some of the taxa reported herein may represent new species, but they are not represented by well-enough preserved specimens and are left in open nomenclature. However, Kingstonia smithfieldensis n. sp. and Bromella utahensis n. sp. are named on the basis of common and well-preserved specimens. New carbon isotope data from Smithfield Canyon from an overlapping section of the lower St. Charles Formation, that add to the overall shape of the SPICE curve, are presented. The new δ13C values above the Elvinia Biozone range from –0.36‰ to +1.5‰, confirming that the SPICE concludes within the Elvinia Biozone

Cancer Biology Data Curation at the Mouse Tumor Biology Database (MTB)

Many advances in the field of cancer biology have been made using mouse models of human cancer. The Mouse Tumor Biology (MTB, "http://tumor.informatics.jax.org":http://tumor.informatics.jax.org) database provides web-based access to data on spontaneous and induced tumors from genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice). These data include standardized tumor names and classifications, pathology reports and images, mouse genetics, genomic and cytogenetic changes occurring in the tumor, strain names, tumor frequency and latency, and literature citations.

Although primary source for the data represented in MTB is peer-reviewed scientific literature an increasing amount of data is derived from disparate sources. MTB includes annotated histopathology images and cytogenetic assay images for mouse tumors where these data are available from The Jackson Laboratory’s mouse colonies and from outside contributors. MTB encourages direct submission of mouse tumor data and images from the cancer research community and provides investigators with a web-accessible tool for image submission and annotation. 

Integrated searches of the data in MTB are facilitated by the use of several controlled vocabularies and by adherence to standard nomenclature. MTB also provides links to other related online resources such as the Mouse Genome Database, Mouse Phenome Database, the Biology of the Mammary Gland Web Site, Festing's Listing of Inbred Strains of Mice, the JAX® Mice Web Site, and the Mouse Models of Human Cancers Consortium's Mouse Repository. 

MTB provides access to data on mouse models of cancer via the internet and has been designed to facilitate the selection of experimental models for cancer research, the evaluation of mouse genetic models of human cancer, the review of patterns of mutations in specific cancers, and the identification of genes that are commonly mutated across a spectrum of cancers.

MTB is supported by NCI grant CA089713

Active current sheets and hot flow anomalies in Mercury's bow shock

Hot flow anomalies (HFAs) represent a subset of solar wind discontinuities interacting with collisionless bow shocks. They are typically formed when the normal component of motional (convective) electric field points toward the embedded current sheet on at least one of its sides. The core region of an HFA contains hot and highly deflected ion flows and rather low and turbulent magnetic field. In this paper, we report first observations of HFA-like events at Mercury identified over a course of two planetary years. Using data from the orbital phase of the MErcury Surface, Space ENvironment, GEochemistry, and Ranging (MESSENGER) mission, we identify a representative ensemble of active current sheets magnetically connected to Mercury's bow shock. We show that some of these events exhibit unambiguous magnetic and particle signatures of HFAs similar to those observed earlier at other planets, and present their key physical characteristics. Our analysis suggests that Mercury's bow shock does not only mediate the flow of supersonic solar wind plasma but also provides conditions for local particle acceleration and heating as predicted by previous numerical simulations. Together with earlier observations of HFA activity at Earth, Venus and Saturn, our results confirm that hot flow anomalies are a common property of planetary bow shocks, and show that the characteristic size of these events is of the order of one planetary radius.Comment: 39 pages, 15 figures, 2 table

Effect of substrate thermal resistance on space-domain microchannel

In recent years, Fluorescent Melting Curve Analysis (FMCA) has become an almost ubiquitous feature of commercial quantitative PCR (qPCR) thermal cyclers. Here a micro-fluidic device is presented capable of performing FMCA within a microchannel. The device consists of modular thermally conductive blocks which can sandwich a microfluidic substrate. Opposing ends of the blocks are held at differing temperatures and a linear thermal gradient is generated along the microfluidic channel. Fluorescent measurements taken from a sample as it passes along the micro-fluidic channel permits fluorescent melting curves to be generated. In this study we measure DNA melting temperature from two plasmid fragments. The effects of flow velocity and ramp-rate are investigated, and measured melting curves are compared to those acquired from a commercially available PCR thermocycler

Nail abnormalities identified in an ageing study of 30 inbred mouse strains.

In a large-scale ageing study, 30 inbred mouse strains were systematically screened for histologic evidence of lesions in all organ systems. Ten strains were diagnosed with similar nail abnormalities. The highest frequency was noted in NON/ShiLtJ mice. Lesions identified fell into two main categories: acute to chronic penetration of the third phalangeal bone through the hyponychium with associated inflammation and bone remodelling or metaplasia of the nail matrix and nail bed associated with severe orthokeratotic hyperkeratosis replacing the nail plate. Penetration of the distal phalanx through the hyponychium appeared to be the initiating feature resulting in nail abnormalities. The accompanying acute to subacute inflammatory response was associated with osteolysis of the distal phalanx. Evaluation of young NON/ShiLtJ mice revealed that these lesions were not often found, or affected only one digit. The only other nail unit abnormality identified was sporadic subungual epidermoid inclusion cysts which closely resembled similar lesions in human patients. These abnormalities, being age-related developments, may have contributed to weight loss due to impacts upon feeding and should be a consideration for future research due to the potential to interact with other experimental factors in ageing studies using the affected strains of mice.American Hair Research Society Mentorship Grants (to SL and AM) Ellison Medical Foundation (to JPS) National Institutes of Health (AG025707, for the Shock Aging Center). The Jackson Laboratory Shared Scientific Services were supported in part by a Basic Cancer Center Core Grant from the National Cancer Institute (CA034196)