Application of Chondroitin Sulfate Derivatives for Understanding Axonal Guidance in the Nervous System during Development

Neuronal axons and their growth cones recognize molecular guidance cues within the local environment, forming axonal pathways to produce precise neuronal networks during nervous system development. Chondroitin sulfates (CS), carbohydrate chains on chondroitin sulfate proteoglycans, exhibit great structural diversity and exert various influences on axons and growth cones as guidance cues or their modulators; however, the relationship between their structural diversity and function in axonal guidance is not well known. To uncover the roles of CS in axonal guidance, artificially modified hybrid molecules: CS derivatives of biotinylated CS and lipid-derivatized CS, were used.The experiments with biotinylated CS suggest that the growing axons act on their environment, modifying CS, and rendering it more favorable for their growth. The experiments with lipid-derivatized CS demonstrated that growth cones distinguish types of CS with different unit contents and are likely to discriminate the structural diversity of CS.The application of CS derivatives is useful in uncovering axon–environment interaction and structure–function relationship of CS directly

Moderate repulsive effects of E-unit-containing chondroitin sulfate (CSE) on behavior of retinal growth cones

Chondroitin sulfate (CS), the carbohydrate chain of chondroitin sulfate proteoglycans, is involved in neuronal circuit formation during development. CS shows great structural diversity with combination of disaccharide units of different structure (A-, C-, D-, or Eunit).However, whether its structural diversity contributes to pathway formation remains unclear. We chemically coupled the reducing end of various types of CS to the amino group of phosphatidylethanolamine (lipid-derivatized CS, CS-PE) and established an in vitro time-lapse assay to observe the behaviors of growth cones of retinal ganglion cells from embryonic day 6 chick retina on exposure to beads coated with lipid-derivatized CS (CS-PE beads). Among CS-PEs with different content of the structural units, the beads coated with E-unit–containing CS-PE [E-unit: GlcAβ1-3GalNAc(4,6-O-disulfate)] (CSE-PE beads) significantly caused the growth cones to retract and to turn away from the beads, but the beads coated with CSA-, CSC- or CSDPE beads did not. Importantly, not all the growth cones retracted equally from the CSE-PE beads, but they showed continuum of the repulsive behaviors; some behaved moderately and others remarkably. The growth cones distinguished different samples of CS: CSE and the others. Moreover, the continuum of the repulsive behaviors suggests that CS might be involved with the fine regulation of growth cones\u27 behavior through its characteristic structure

Fermented Soybean Powder with Rice Mold in the Absence of Salt Stimulates the Cellular Immune System and Suppresses the Humoral Immune Response in Mice

The immunomodulatory effect of fermented non-salty soybean powder (NSBP) was investigated in C3H/HeN mice. The number of splenic CD11b(+), CD49b(+), and interferon (IFN)-gamma(+)CD4(+) cells increased significantly, while that of interleukin (IL)-4(+)CD4(+) and CD19(+) cells decreased significantly in cultures containing NSBP. Similarly, in the spleen and Peyer's patches of mice fed a diet containing NSBP, the number of IL-12(+)CD11b(+), CD49b(+), and IFN-gamma(+)CD4(+) cells increased noticeably, whereas the number of splenic IL-4(+)CD4(+) and CD19b(+) cells was lower compared to mice fed an NSBP-free diet. Superoxide production by peritoneal macrophages was significantly higher in mice fed an NSBP-containing diet. Both intestinal total IgA and serum total IgG levels declined in mice fed the NSBP-containing diet. Microarray analysis of mRNAs extracted from Peyer's patch cells of mice fed the NSBP-containing diet indicated an increase in the expression of several genes related to cellular immune responses, while the expression of genes related to immunoglobulin production decreased. These results indicate that NSBP stimulates the cellular immune response, but suppresses the acquired humoral immune response in C3H/HeN mice.ArticleJOURNAL OF NUTRITIONAL SCIENCE AND VITAMINOLOGY. 59(6):564-569 (2013)journal articl

Utilization of lignin in empty fruit bunch for production of fine chemicals: development of subcritical water technology and ΔpcaHG-ΔcatA Rhodococcus jostii RHA1

Lignin is an alternative source of chemicals particularly phenolic compounds if it could broken down into smaller molecular units. Subcritical water (SCW) is a known technology that has the ability to break down lignin by hydrolysis. In this study, the SCW depolymerizes empty fruit bunch derived lignin into a mixture of aromatic compounds. The mixture, however, is impractical to be utilized and the cost to separate each of the components is relatively high. Rhodococcus jostii RHA1 is a bacterium that can degrade a wide range of aromatic compounds. Specific gene deletion of RHA1 has shown that the RHA1 loses its ability to catabolize specific chemicals. This research project aims to utilize empty fruit bunch derived lignin via SCW technology and subsequently biological process using mutant Rhodococcus jostii RHA1, ΔpcaHG-ΔcatA mutant RHA1

Microbial diversity in disturbed and undisturbed peat swamp forest and isolation of cyanobacteria

Microbial diversity from disturbed and undisturbed peat swamp forest obtained from next generation sequencing. Through this analysis, genera cyanobacteria is being compared with isolated cyanobacteria from both environmments which is extremely acidic. For the future study, this genera has ability as biofertilizer in acidic soil for plantations

Characterization of musty odor producing actinomycetes in Malaysia

The presence of geosmin and 2-methylisoborneol (2-MIB) becomes an increasing concern as they are known to cause earthy or musty odor in freshwater environments. Geosmin and 2-MIB outbreaks in Malaysia are not well understood and since Malaysia has a stable temperature throughout the year, no information has been reported on effect of temperature to the odor production. In this study, 6 isolated strains were selected for study of the effect of temperature (20, 25, 30, 35, 40, 45 & 50°C) on geosmin and 2-MIB production. Preliminary results indicate that at temperature 30 °C, Strain 5 showed highest geosmin production (129.06 µg/L) and Strain 2 produced highest 2-MIB (19.89 µg/L). PCR band was obtained in a test whether these isolated strains had geoA gene or not

Microcystin degradation in sphingopyxis sp. C-1

The microcystin-degrading gene cluster, mlrA-B-C-D, plaies an important role in the degradation process of hepatotoxic microcystins for several bacterial species. However after microcystin is degraded to linear-microcystin by MlrA, it is still unknown about where and by what it is metabolited. In order to clarify it, we disrupted the mlrB gene and mlrC gene in chromosome of microcystin-degrading bacteria, Sphingopyxis sp. C-1. The cells disrupted mlrB gene and mlrC gene accumulated of microcystin-degradation product, linear-microcystin and tetrapeptide, respectively, whereas the cell free extracts of ?mlrB cells detected Adda and ?mlrC cells accumulated tetrapeptide. Moreover, topology analysis of MlrB using the ß-lactamase gene fusion method insisted MlrB is the peripheral protein binding the inner-membrane. These results insist that MlrB degrades the linear microcystin in the periplasmic space and MlrC degrades tetrapeptide in cytoplasm. Thus, in intact cells, MlrC cannot degrade linear-microcystin as being separated in inner-membrane from linear-microcystin while MlrC is capable of degrading the linear-microcystin in cell-free extract