Kost 3gene nuclear combined new

Combined nexus file for all three nuclear data set

Kost taxa for polyploid

Excel spreadsheet for all voucher information for each accession. Note that each accession isidnetified by "greenhouse accession number" in matrices, which directly correspond to the voucher information presented

Kost combined 5gene plastid new

Combined nexus file for all 5 plastid data set

Top blast hits of GG1 transcripts in the NCBI nr data base

Top blast hit of each GG1 transcript in the NCBI nr data base using BlastX (e-value threshold 10-3)

Interproscan analysis of GG1 transcripts

Interproscan analysis of GG1 transcript

Assembled R40 transcripts

We assembled quality filtered and trimmed 454 reads with Newbler for the R40 strain

Protein translation of predicted ORFs for the R40 transcripts

Protein translations of the predicted ORFs for the R40 transcripts. We selected the longest ORF prediction for each transcript. The three numbers in the fasta header refer to the frame, the starting and the end coordinates of the predicted ORF on the original transcript sequences

Interproscan analysis of R40 transcripts

Interproscan analysis of R40 transcript

Predicted ORFs for the GG1 transcripts

Predicted ORFs for the GG1 transcripts. We selected the longest ORF prediction for each transcript

Top blast hits of R40 transcripts in the NCBI nr data base

Top blast hit of each R40 transcript in the NCBI nr data base using BlastX (e-value threshold 10-3)