The Discovery of XY Sex Chromosomes in a \u3cem\u3eBoa\u3c/em\u3e and \u3cem\u3ePython\u3c/em\u3e

For over 50 years, biologists have accepted that all extant snakes share the same ZW sex chromosomes derived from a common ancestor [1, 2, 3], with different species exhibiting sex chromosomes at varying stages of differentiation. Accordingly, snakes have been a well-studied model for sex chromosome evolution in animals [1, 4]. A review of the literature, however, reveals no compelling support that boas and pythons possess ZW sex chromosomes [2, 5]. Furthermore, phylogenetic patterns of facultative parthenogenesis in snakes and a sex-linked color mutation in the ball python (Python regius) are best explained by boas and pythons possessing an XY sex chromosome system [6, 7]. Here we demonstrate that a boa (Boa imperator) and python (Python bivittatus) indeed possess XY sex chromosomes, based on the discovery of male-specific genetic markers in both species. We use these markers, along with transcriptomic and genomic data, to identify distinct sex chromosomes in boas and pythons, demonstrating that XY systems evolved independently in each lineage. This discovery highlights the dynamic evolution of vertebrate sex chromosomes and further enhances the value of snakes as a model for studying sex chromosome evolution

Managing Road Safety through the Use of Linked Data and Heat Maps

Road traffic injuries are a critical public health challenge that requires valuable efforts for effective and sustainable prevention. Worldwide, an estimated 1.2 million people are killed in road crashes each year and as many as 50 million are injured. An analysis of data provided by authoritative sources can be a valuable source for understanding which are the most critical points on the road network. The aim of this paper is to discover data about road accidents in Italy and to provide useful visualization for improving road safety. Starting from the annual report of road accidents of the Automobile Club of Italy, we transform the original data into an RDF dataset according to the Linked Open Data principles and connect it to external datasets. Then, an integration with Open Street Map allows to display the accident data on a map. Here, the final user is able to identify which road sections are most critical based on the number of deaths, injuries or accidents

Intuitive visualization technique to support eye tracking data analysis: A user-study

While fixation distribution is conventionally visualized using heat maps, there is still a lack of a commonly accepted technique to visualize saccade distributions. Inspired by wind maps and the Oriented Line Integral Convolution (OLIC) technique, we visualize saccades by drawing ink droplets which follow the direction indicated by a flow direction map. This direction map is computed using a kernel density estimation technique over the tangent directions to each saccade gaze point. The image is further blended with the corresponding heat map. It results in an animation or a static image showing main directions of the transitions between different areas of interest. We also present results from a web-based user study where naive non-expert users where asked to identify the direction of the flow and simple patterns. The results showed that these visualizations can successfully be used to support visual analysis of the eye-tracking data. It also showed that the use of animation allows to ease the task and to improve the performance

Ptychographic coherent diffractive imaging with orthogonal probe relaxation

Ptychography is a scanning coherent diffractive imaging (CDI) technique that relies upon a high level of stability of the illumination during the course of an experiment. This is particularly an issue for coherent short wavelength sources, where the beam intensity is usually tightly focused on the sample in order to maximize the photon flux density on the illuminated region of the sample and thus a small change in the beam position results in a significant change in illumination of the sample. We present an improved ptychographic method that allows for limited stability of the illumination wavefront and thus significantly improve the reconstruction quality without additional prior knowledge. We have tested our reconstruction method in a proof of concept experiment, where the beam instability of a visible light source was emulated using a piezo driven mirror, and also in a short wavelength microscopy CDI setup using a high harmonic generation source in the extreme ultraviolet range. Our work shows a natural extension of the ptychography method that paves the way to use ptychographic imaging with any limited pointing stability coherent source such as free electron or soft X-ray lasers and improve reconstruction quality of long duration synchrotron experiments

Towards laser driven table-top coherent diffractive X-ray microscopy of cultured hippocampal neurons

Neurodegenerative diseases such as Alzheimer’s disease have a huge impact on the world population; over 44 million people worldwide and 850,000 in the UK were recorded as living with dementia in 2013. There are numerous theories attempting to explain the cause of Alzheimer’s disease. Histology from the brains of people who had Alzheimer’s disease shows neurofibilliary tangles and amyloid plaques. Their role in the mechanism of disease is not yet completely understood but we envisage that novel imaging techniques may aid understanding. We present initial data collected using confocal fluorescence microscopy and hard X-ray scanning diffractive microscopy (ptychography) on cultured neuron samples plus high resolution large field of view imaging of test samples from a soft X-ray lab based high harmonic generation (HHG) source

Towards an Information Theoretic Framework for Evolutionary Learning

The vital essence of evolutionary learning consists of information flows between the environment and the entities differentially surviving and reproducing therein. Gain or loss of information in individuals and populations due to evolutionary steps should be considered in evolutionary algorithm theory and practice. Information theory has rarely been applied to evolutionary computation - a lacuna that this dissertation addresses, with an emphasis on objectively and explicitly evaluating the ensemble models implicit in evolutionary learning. Information theoretic functionals can provide objective, justifiable, general, computable, commensurate measures of fitness and diversity. We identify information transmission channels implicit in evolutionary learning. We define information distance metrics and indices for ensembles. We extend Price\u27s Theorem to non-random mating, give it an effective fitness interpretation and decompose it to show the key factors influencing heritability and evolvability. We argue that heritability and evolvability of our information theoretic indicators are high. We illustrate use of our indices for reproductive and survival selection. We develop algorithms to estimate information theoretic quantities on mixed continuous and discrete data via the empirical copula and information dimension. We extend statistical resampling. We present experimental and real world application results: chaotic time series prediction; parity; complex continuous functions; industrial process control; and small sample social science data. We formalize conjectures regarding evolutionary learning and information geometry

Pointing all around you : selection performance of mouse and ray-cast pointing in full-coverage displays

Funding: SurfNet (NSERC, Canada), EPSRC (Small Equipment Grant).As display environments become larger and more diverse - now often encompassing multiple walls and room surfaces - it is becoming more common that users must find and manipulate digital artifacts not directly in front of them. There is little understanding, however, about what techniques and devices are best for carrying out basic operations above, behind, or to the side of the user. We conducted an empirical study comparing two main techniques that are suitable for full-coverage display environments: mouse-based pointing, and ray-cast `laser' pointing. Participants completed search and pointing tasks on the walls and ceiling, and we measured completion time, path lengths and perceived effort. Our study showed a strong interaction between performance and target location: when the target position was not known a priori the mouse was fastest for targets on the front wall, but ray-casting was faster for targets behind the user. Our findings provide new empirical evidence that can help designers choose pointing techniques for full-coverage spaces.Postprin

Effects of Storage Conditions on Endophyte and Seed Viability in Pasture Grasses

Several important temperate pasture grasses have co-evolved with mutualistic Epichloë fungal endophytes. These endophytes impart beneficial attributes to their host as they enhance the fitness of the grass when under biotic and abiotic stresses. The asexual species of these fungi (formerly classed as Neotyphodium) are obligate symbionts, and efficiently colonise newly formed tillers and infect seed by direct colonisation of the embryo. These endophytes are strictly seed transmitted. Survival of the fungus in this seed is therefore critical for the dissemination of endophyte-infected seed to grassland farmers. Longevity of endophyte in stored seed is primarily determined by the length of storage, temperature, and relative humidity as this is in equilibrium with seed moisture. Elevated temperature and relative humidity both reduce endophyte viability. The relative importance of each of these environmental parameters is unclear. Longevity may be further modified by grass species, cultivar, seed lot, and endophyte strain. Valuable seed requiring long term storage can utilise controlled storage facilities where temperature is preferably ≤ 5oC and relative humidity ≤ 30% (seed moisture \u3c 8%). For large quantities of commercial seed, moisture barrier packaging can be used