10,566 research outputs found
Three-Dimensional Ionisation, Dust RT and Chemical Modelling of Planetary Nebulae
The assumption of spherical symmetry is not justified for the vast majority
of PNe. The interpretation of spatially-resolved observations cannot rely
solely on the application of 1D codes, which may yield incorrect abundances
determinations resulting in misleading conclusions. The 3D photoionisation code
MOCASSIN (Monte CAarlo SimulationS of ionised Nebulae) is designed to remedy
these shortcomings. The 3D transfer of both primary and secondary radiation is
treated self-consistently without the need of approximations. The code was
benchmarked and has been applied to the study of several PNe. The current
version includes a fully self-consistent radiative transfer treatment for dust
grains mixed within the gas, taking into account the microphysics of dust-gas
interactions within the geometry-independent Monte Carlo transfer. The new code
provides an excellent tool for the self-consistent analysis of dusty ionised
regions showing asymmetries and/or density and chemical inhomogeneities. Work
is currently in progress to incorporate the processes that dominate the thermal
balance of photo-dissociation regions (PDRs), as well as the formation and
destruction processes for all the main molecular species.Comment: 3 pages, to appear in Proc. IAU Symp. 234, Planetary Nebulae in Our
Galaxy and Beyond (3-7 Apr 2006), eds. M.J. Barlow & R.H. Mendez (Cambridge
Univ. Press
The Effects of Direct Instruction of Vocabulary on High School Special Education Students’ Reading Comprehension
This study focused on improving the reading comprehension levels of high school special education students through direct instruction of academic level vocabulary. This study was designed for eight special education students, attending a Midwestern public school who were considered special education. The intervention was conducted over a two week period for twenty five minute every other day using a vocabulary graphic organizer. Data measured the students’ ability to answer implicit and explicit questions about text with and without look backs to the text. The students did not demonstrate a significant gain in reading comprehension skills after the vocabulary intervention
Survival under stress: molecular mechanisms of metabolic rate depression in animals
For many species, survival under harsh environmental conditions includes metabolic rate depression, an escape into a hypometabolic or dormant state. Studies in my laboratory are analysing the molecular mechanisms and regulatory events that underlie transitions to and from hypometabolic states In systems including anoxia-tolerant turtles and molluscs, estivating snails and toads, hibernating small mammals, and freeze tolerant frogs and insects. Our newest research targets two areas: the role of protein kinases in regulating metabolic adjustments and the role of stress-induced gene expression in producing specific adaptive proteins. Protein kinases A, C and G are all linked to stress-induced signal transduction in various systems, and new studies also show tissue-specific activation of mitogen-activated protein kinases (ERK, JNK, see list of abbreviations p38). Protein adaptations supporting stress tolerance are being sought using cDNA library screening, differential display PCR and Northern blotting to analyse gene expression. These techniques offer new insights into the types of cellular targets that must be coordinated to achieve metabolic suppression and facilitate easy analysis of organ-, time-, and stress-specific gene expression. For example, freeze-induced gene expression in frog liver includes upregulation of genes for subunits of fibrinogen and ADP/ATP translocase, whereas mitochondrial genes coding for subunits of NADH-ubiquinone oxidoreductase subunit 5 and cytochrome C oxidase subunit 1 were upregulated during anoxia in turtle heart
World Wide Diversity of \u3ci\u3ePhytophthora capsici\u3c/i\u3e
The plant pathogen Phytophthora capsici is a genetically diverse organism that is a global problem. It effects many crops across the Solanacea, Cucurbitacea, andLeguminosea. As a result of the large diversity between individuals (and by extension populations) it has been previously near impossible to make meaningful comparisons between individuals of geographically distinct locations. Here we present the results of applying Next Generation Sequencing (NGS) technologies to a representative panel of isolates. This information and data is further used to demonstrate how this diversity has a functionally relevent effect on a class of proteins responsible for the infectious process. We also demonstrate the application of these technologies and techniques to even lesser studied plant pathogen systems and how they can be used to make intelligent decisions about isolate selection for future studies
Mocassin: A fully three-dimensional Monte Carlo photoionization code
The study of photoionized environments is fundamental to many astrophysical
problems. Up to the present most photoionization codes have numerically solved
the equations of radiative transfer by making the extreme simplifying
assumption of spherical symmetry. Unfortunately very few real astronomical
nebulae satisfy this requirement. To remedy these shortcomings, a
self-consistent, three-dimensional radiative transfer code has been developed
using Monte Carlo techniques. The code, Mocassin, is designed to build
realistic models of photoionized nebulae having arbitraries geometry and
density distributions with both the stellar and diffuse radiation fields
treated self-consistently. In addition, the code is capable of tretating on or
more exciting stars located at non-central locations. The gaseous region is
approximated by a cuboidal Cartesian grid composed of numerous cells. The
physical conditions within each grid cell are determined by solving the thermal
equilibrium and ionization balance equations This requires a knowledge of the
local primary and secondary radiation fields, which are calculated
self-consistently by locally simulating the individual processes of ionization
and recombination. The main structure and computational methods used in the
Mocassin code are described in this paper. Mocassin has been benchmarked
against established one-dimensional spherically symmetric codes for a number of
standard cases, as defined by the Lexington/Meudon photoionization workshops
(Pequignot et al., 1986; Ferland et al., 1995; Pequignot et al.,
2001)\citep{pequignot86,ferland95, pequignot01}. The results obtained for the
benchmark cases are satisfactory and are presented in this paper. A performance
analysis has also been carried out and is discussed here.Comment: 17 pages, 4 figures, 1 appendix Changes: appendix adde
Spectral variation in the X-ray pulsar GX 1+4 during a low-flux episode
The X-ray pulsar GX 1+4 was observed with the RXTE satellite for a total of
51ks between 1996 July 19 - 21. During this period the flux decreased smoothly
from an initial mean level of ~ 6 X 10^36 erg/s to a minimum of ~ 4 X 10^35
erg/s (2-60 keV, assuming a source distance of 10 kpc) before partially
recovering towards the initial level at the end of the observation.
BATSE pulse timing measurements indicate that a torque reversal took place
approximately 10 d after this observation. Both the mean pulse profile and the
photon spectrum varied significantly. The observed variation in the source may
provide important clues as to the mechanism of torque reversals.
The single best-fitting spectral model was based on a component originating
from thermal photons with kT ~ 1 keV Comptonised by a plasma of temperature kT
\~ 7 keV. Both the flux modulation with phase during the brightest interval and
the evolution of the mean spectra over the course of the observation are
consistent with variations in this model component; with, in addition, a
doubling of the column density nH contributing to the mean spectral change.
A strong flare of duration 50 s was observed during the interval of minimum
flux, with the peak flux ~ 20 times the mean level. Although beaming effects
are likely to mask the true variation in Mdot thought to give rise to the
flare, the timing of a modest increase in flux prior to the flare is consistent
with dual episodes of accretion resulting from successive orbits of a locally
dense patch of matter in the accretion disc.Comment: 8 pages, 3 figures, submitted to MNRA
Theoretical calculations of the HI, HeI and HeII free-bound continuou emission spectra
We present coefficients for the calculation of the continuous emission spectra of HI, HeI and HeII due to electron-ion recombination. Coefficients are given for photon energies from the first ionization threshold for each ion to the n=20 threshold of hydrogen (36.5um), and for temperatures 100 K <= Te <=10^5 K. The emission coefficients for HeI are derived from accurate ab initio photoionization data. The coefficients are scaled in such a way that they may be interpolated by a simple scheme with uncertainties less than 1% in the whole temperature and wavelength domain. The data are suitable for incorporation into photoionisation/plasma codes and should aid with the interpretation of spectra from the very cold ionised gas phase inferred to exist in a number of gaseous clouds
Pulse Profiles, Accretion Column Dips and a Flare in GX 1+4 During a Faint State
The Rossi X-ray Timing Explorer (RXTE) spacecraft observed the X-ray pulsar
GX 1+4 for a period of 34 hours on July 19/20 1996. The source faded from an
intensity of ~20 mCrab to a minimum of <~0.7 mCrab and then partially recovered
towards the end of the observation. This extended minimum lasted ~40,000
seconds. Phase folded light curves at a barycentric rotation period of
124.36568 +/- 0.00020 seconds show that near the center of the extended minimum
the source stopped pulsing in the traditional sense but retained a weak dip
feature at the rotation period. Away from the extended minimum the dips are
progressively narrower at higher energies and may be interpreted as
obscurations or eclipses of the hot spot by the accretion column. The pulse
profile changed from leading-edge bright before the extended minimum to
trailing-edge bright after it. Data from the Burst and Transient Source
Experiment (BATSE) show that a torque reversal occurred <10 days after our
observation. Our data indicate that the observed rotation departs from a
constant period with a Pdot/P value of ~-1.5% per year at a 4.5 sigma
significance. We infer that we may have serendipitously obtained data, with
high sensitivity and temporal resolution about the time of an accretion disk
spin reversal. We also observed a rapid flare which had some precursor
activity, close to the center of the extended minimum.Comment: 19 pages, 6 figures, accepted for publication in Astrophysical
Journal (tentatively scheduled for vol. 529 #1, 20 Jan 2000
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