Tectonic and lithological controls on fluvial landscape development in Central-Eastern Portugal: Insights from long profile tributary stream analyses

This study examines the long profiles of tributaries of the Tagus and Zêzere rivers in Portugal (West Iberia) in order to provide new insights into patterns, timing, and controls on drainage development during the Quaternary incision stage. The studied streams are incised into a relict culminant fluvial surface, abandoned at the beginning of the incision stage. The streams flow through a landscape with bedrock variations in lithology (mainly granites and metasediments) and faulted blocks with distinct uplift rates. The long profiles of the analyzed streams record an older transitory knickpoint/knickzone separating (1) an upstream relict graded profile, with lower steepness and higher concavity, that reflects a long period of quasi-equilibrium conditions reached after the beginning of the incision stage, and (2) a downstream rejuvenated long profile, with steeper gradient and lower concavity, particularly for the final reach, which is often convex. The rejuvenated reaches testify to the upstream propagation of several incision waves, interpreted as the response of each stream to increasing crustal uplift and prolonged periods of base-level lowering by the trunk drainages, coeval with low sea level conditions. The morphological configurations of the long profiles enabled spatial and relative temporal patterns of incisions to be quantified. The incision values of streams flowing on the Portuguese Central Range (PCR; ca. 380–150 m) are variable but generally higher than the incision values of streams flowing on the adjacent South Portugal Planation Surface (SPPS; ca. 220–110 m), corroborating differential uplift of the PCR relative to the SPPS. Owing to the fact that the relict graded profiles can be correlated with the Tagus River T1 terrace (1.1–0.9 My) present in the study area, incision rates can be estimated (1) for the streams located in the PCR, 0.38–0.15 m/ky and (2) for the streams flowing on the SPPS, 0.22–0.12 m/ky. The differential uplift inferred in the study area supports the neotectonic activity of the bordering faults, as proposed in previous studies based upon other geological evidence

The effect of thermal variance on the phenotype of marine turtle offspring.

PublishedJournal ArticleTemperature can have a profound effect on the phenotype of reptilian offspring, yet the bulk of current research considers the effects of constant incubation temperatures on offspring morphology, with few studies examining the natural thermal variance that occurs in the wild. Over two consecutive nesting seasons, we placed temperature data loggers in 57 naturally incubating clutches of loggerhead sea turtles Caretta caretta and found that greater diel thermal variance during incubation significantly reduced offspring mass, potentially reducing survival of hatchlings during their journey from the nest to offshore waters and beyond. With predicted scenarios of climate change, behavioral plasticity in nest site selection may be key for the survival of ectothermic species, particularly those with temperature-dependent sex determination.We thank all the volunteers of the Marine Turtle Conservation Project (northern Cyprus) who aided in data collection during the 2011/2012 nesting seasons. This work would not have been possible without the Society for the Protection of Turtles (SPOT) and the Department for Environmental Protection. For their continued support we thank the British Chelonia Group, the British High Commission, the British Resident’s Society, Ektam Kıbrıs, Erwin Warth Foundation, Friends of SPOT, Gemini Dataloggers (UK), and Kuzey Kıbrıs Turkcell

Shelf life: Neritic habitat use of a turtle population highly threatened by fisheries

This is the final version. Available on open access from Wiley via the DOI in this recordAim: It is difficult to mitigate threats to marine vertebrates until their habitat use is understood. We report on a decade of satellite tracking loggerhead turtles (Caretta caretta) from an important nesting site to determine priority habitats for their protection in a region where they are known to be heavily impacted by fisheries. Location: Cyprus, Eastern Mediterranean. Method: We tracked 27 adult female loggerheads between 2001 and 2012 from North Cyprus nesting beaches. To eliminate potential biases, we included females nesting on all coasts of our study area, at different periods of the nesting season and from a range of size classes. Results: Foraging sites were distributed over the continental shelf of Cyprus, the Levant and North Africa, up to a maximum distance of 2100 km from nesting sites. Foraging sites were clustered in (1) near-shore waters of Cyprus and Syria, (2) offshore waters of Egypt and (3) offshore and near-shore regions of Libya and Tunisia. The North Cyprus and west Egypt/east Libyan coasts are important areas for loggerhead turtles during migration. Movement patterns within foraging sites strongly suggest benthic feeding in discrete areas. Early nesters visited other rookeries in Turkey, Syria and Israel where they likely laid further clutches. Tracking suggests minimum annual mortality of 11%, comparable to other fishery-impacted loggerhead populations. Main conclusions: This work further highlights the importance of neritic habitats of Libya and Tunisia as areas likely used by loggerhead turtles from many of the Mediterranean rookeries and where the threat of fisheries bycatch is high. Our tracking data also suggest that anthropogenic mortalities may have occurred in North Cyprus, Syria and Egypt; all within near-shore marine areas where small-scale fisheries operate. Protection of this species across many geopolitical units is a major challenge and documenting their distribution is an important first step.Peoples Trust for Endangered SpeciesBritish Chelonia GroupUnited States Agency for International DevelopmentBP EgyptApacheNatural Environment Research Council (NERC)Erwin Warth FoundationKuzey Kıbrıs TurkcellEktam KıbrısSEATURTLE.orgMEDASSETDarwin InitiativeBritish High Commission in CyprusBritish Residents Society of North CyprusMarine Turtle Conservation ProjectMarine Turtle Research GroupSociety for the Protection of Turtles in North Cyprus (SPOT)North Cyprus Department of Environmental Protectio

Detecting green shoots of recovery: The importance of long-term individual-based monitoring of marine turtles

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this recordPopulation monitoring is an essential part of evaluating the effectiveness of management interventions for conservation. Coastal breeding aggregations of marine vertebrate species that come ashore to pup or nest provide an opportunistic window of observation into otherwise widely dispersed populations. Green turtle (Chelonia mydas) nesting on the north and west coasts of northern Cyprus has been monitored consistently and exhaustively since 1993, with an intensive saturation tagging programme running at one key site for the same duration. This historically depleted nesting population is showing signs of recovery, possibly in response to nest protection approaching two decades, with increasing nest numbers and rising levels of recruitment. Strong correlation between year-to-year magnitude of nesting and the proportion of new breeders in the nesting cohort implies that recruitment of new individuals to the breeding population is an important driver of this recovery trend. Recent changes in fishing activities may be impacting the local juvenile neritic stage, however, which may hinder this potential recovery. Individuals returning to breed after two years laid fewer clutches than those returning after three or four years, demonstrating a trade-off between remigration interval and breeding output. Average clutch frequencies have remained stable around a median of three clutches a year per female despite the demographic shift towards new nesters, which typically lay fewer clutches in their first season. We show that where local fecundity has been adequately assessed, the use of average clutch frequencies can be a reliable method for deriving nester abundance from nest counts. Index sites where individual-based monitoring is possible will be important in monitoring long-term climate driven changes in reproductive rates.European Social Fun

Satellite tracking and stable isotope analysis highlight differential recruitment among foraging areas in green turtles

This is the final version. Available on open access from Inter Research via the DOI in this recordIdentifying links between breeding and non-breeding sites in migratory animals is an important step in understanding their ecology. Recognising the relative importance of foraging areas and ascertaining site-specific levels of recruitment can provide fundamental and applied insights. Here, satellite telemetry and the stable isotope ratios (δ13C, δ15N and δ34S) of 230 green turtles Chelonia mydas from a regionally important rookery in northern Cyprus were employed to evaluate the relative importance of 4 foraging areas. A preliminary analysis of stable isotope ratios suggested that a major foraging area had been missed through satellite telemetry as a large proportion of turtles had isotope ratios that did not correspond to sites previously identified. Stable isotope ratios were then employed to select 5 turtles to be fitted with platform terminal transmitters in 2015. All 5 turtles were subsequently tracked to the same location, Lake Bardawil in Egypt. Serially collected tissue samples from 45 females, ranging over 2 to 4 breeding seasons, suggested that foraging site fidelity was very common, with 82% of females exhibiting extremely high temporal consistency in isotope ratios. Quantifying fidelity allowed an evaluation of foraging area-specific contributions to each breeding cohort over the past 2 decades and demonstrated that recruitment was unequal among sites, and dynamic over time, with Egypt now currently the major contributor to the nesting aggregation. This work demonstrates the utility of stable isotope analysis to elucidate the spatial ecology of cryptic taxa and illustrates how more robust baselines can be assembled against which to measure the success of future marine conservation initiatives.P.J.B. is funded by a National Environment Research Council grant 1353865. C.C. is supported by the project CTM2013-48163 from Ministerio de Economía y Competitividad. We thank the following for their support: Marine Turtle Conservation Project (MTCP), Mediterranean Association to Save the Sea Turtles (MEDASSSET), North Cyprus Department of Environmental Protection, seaturtle. org, Society for the Protection of Sea Turtles in North Cyprus (SPOT); and for funding: Apache, British Chelonia Group, BP Egypt, the British High Commission and British Residents Society of North Cyprus, Darwin Initiative, Erwin Warth Foundation, Friends of SPOT, INNPA, Kuzey Kıbrıs Turkcell, NERC, Marine Conservation Society Sea Turtle Conservation Fund, and MEDASSET, UK

Migratory corridors and foraging hotspots: Critical habitats identified for Mediterranean green turtles

This is the author accepted manuscript. The final version is available from Wiley via the DOI in this recordAim: Levels of sea turtle bycatch in the Mediterranean are thought to be unsustainable. We provide a comprehensive overview of adult green turtle (Chelonia mydas) distribution during nesting, migration and foraging phases, highlighting transitory as well as residential areas of high use to facilitate adequate protection for this long-lived, migratory species. Location: Mediterranean Sea. Methods: Thirty-four females were satellite tracked from breeding grounds in the four countries with major nesting (Cyprus, Turkey, Israel and Syria) for a total of 8521 (mean: 251) tracking days in a collaborative effort to summarize the most comprehensive set of distribution data thus far assembled for this species in the Mediterranean. Results: Ten foraging grounds are identified, with two major hotspots in Libya accounting for >50% of turtles tracked to conclusive endpoints. The coastlines of Egypt and Libya contain high densities of migrating turtles following the nesting season, particularly July-September, and likely also pre-nesting (April-June). A high-use seasonal pelagic corridor running south-west from Turkey and Cyprus to Egypt is also evident, used by >50% of all tracked turtles. Main conclusions: Bycatch levels and mortality rates for the key foraging areas and high-density seasonal pathways identified here are largely unknown and should be investigated as a priority. We recommend that the Gulf of Sirte in Libya be explored as a potential biodiversity hotspot and considered for proposal as a marine protected area (MPA). Green turtle fidelity to nesting beaches, foraging areas and migratory pathways renders them vulnerable to localized threats but enables targeted mitigation measures and protection

The secret world of shrimps: polarisation vision at its best

Animal vision spans a great range of complexity, with systems evolving to detect variations in optical intensity, distribution, colour, and polarisation. Polarisation vision systems studied to date detect one to four channels of linear polarisation, combining them in opponent pairs to provide intensity-independent operation. Circular polarisation vision has never been seen, and is widely believed to play no part in animal vision. Polarisation is fully measured via Stokes' parameters--obtained by combined linear and circular polarisation measurements. Optimal polarisation vision is the ability to see Stokes' parameters: here we show that the crustacean \emph{Gonodactylus smithii} measures the exact components required. This vision provides optimal contrast-enhancement, and precise determination of polarisation with no confusion-states or neutral-points--significant advantages. We emphasise that linear and circular polarisation vision are not different modalities--both are necessary for optimal polarisation vision, regardless of the presence of strongly linear or circularly polarised features in the animal's environment.Comment: 10 pages, 6 figures, 2 table

The Use of Single-Sided NMR to Study Moisture Behaviour in an Activated Carbon Fibre/Phenolic Composite

Nuclear Magnetic Resonance (NMR) has been shown to be a useful technique to study the form and content of water in polymer composites. Composites using activated carbon fibres with phenolic resin have complex water absorption behaviour which would benefit from such investigation; however, the presence of the conductive fibres can make NMR problematic. In this study, single-sided NMR has been successfully used on such material by developing a method for sample-to-sample compensation for the effect of conductivity. Transverse relaxation curves showed water to be primarily in two states in the resin, corresponding to "bound" and "mobile" molecules. In addition, two much less bound states were identified in the composite, associated firstly with water adsorbed on to the fibre surface and secondly with clusters of water molecules moving more freely within the fibre pores

Spontaneous corneal melting in pregnancy: a case report

<p>Abstract</p> <p>Background</p> <p>To report a case of spontaneous corneal melting in pregnancy. We reviewed the literature on corneal melting and the effect of pregnancy on cornea and collagen containing tissues.</p> <p>Case presentation</p> <p>A 29-year-old woman who underwent radial keratotomy in both eyes followed by trabeculectomy in her left eye developed corneal melting in the same eye, in her seventh month of pregnancy. Despite screening, no infectious or immune mediated condition could be identified. She was managed conservatively with cyanoacrylate glue, bandage contact lens, lubricants and antibiotics.</p> <p>Conclusion</p> <p>It may not always be possible to find the underlying cause of corneal melting but the more common underlying causes should be ruled out by proper investigations. Pregnancy with its host of hormonal changes could potentially have some effect on corneal collagen leading to corneal melting in compromised corneas.</p

Marine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays

In order to understand the structure and biological significance of integrons and associated gene cassettes in marine polluted sediments, metagenomic DNAs were extracted from sites at Suez and Tokyo Bays. PCR amplicons containing new integrase genes, intI, linked with novel gene cassettes, were recovered and had sizes from 1.8 to 2.5 kb. This approach uncovered, for the first time, the structure and diversity of both marine integron attachment site, attI, and the first gene cassette, the most efficiently expressed integron-associated gene cassette. The recovered 13 and 20 intI phylotypes, from Suez and Tokyo Bay samples, respectively, showed a highly divergence, suggesting a difference in integron composition between the sampling sites. Some intI phylotypes showed similarity with that from Geobacter metallireducens, belonging to Deltaproteobacteria, the dominant class in both sampling sites, as determined by 16S rRNA gene analysis. Thirty distinct families of putative attI site, as determined by the presence of an attI-like simple site, were recovered. A total of 146 and 68 gene cassettes represented Suez and Tokyo Bay unsaturated cassette pools, respectively. Gene cassettes, including a first cassette, from both sampling sites encoded two novel families of glyoxalase/bleomycin antibiotic-resistance protein. Gene cassettes from Suez Bay encoded proteins similar to haloacid dehalogenases, protein disulfide isomerases and death-on-curing and plasmid maintenance system killer proteins. First gene cassettes from Tokyo Bay encoded a xenobiotic-degrading protein, cardiolipin synthetase, esterase and WD40-like β propeller protein. Many of the first gene cassettes encoded proteins with no ascribable function but some of them were duplicated and possessed signal functional sites, suggesting efficient adaptive functions to their bacterial sources. Thus, each sampling site had a specific profile of integrons and cassette types consistent with the hypothesis that the environment shapes the genome