Genes involved in barley yellow dwarf virus resistance of maize

KEY MESSAGE: The results of our study suggest that genes involved in general resistance mechanisms of plants contribute to variation of BYDV resistance in maize. ABSTRACT: With increasing winter temperatures in Europe, Barley yellow dwarf virus (BYDV) is expected to become a prominent problem in maize cultivation. Breeding for resistance is the best strategy to control the disease and break the transmission cycle of the virus. The objectives of our study were (1) to determine genetic variation with respect to BYDV resistance in a broad germplasm set and (2) to identify single nucleotide polymorphism (SNP) markers linked to genes that are involved in BYDV resistance. An association mapping population with 267 genotypes representing the world’s maize gene pool was grown in the greenhouse. Plants were inoculated with BYDV-PAV using viruliferous Rhopalosiphum padi. In the association mapping population, we observed considerable genotypic variance for the trait virus extinction as measured by double antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) and the infection rate. In a genome-wide association study, we observed three SNPs significantly [false discovery rate (FDR) = 0.05] associated with the virus extinction on chromosome 10 explaining together 25 % of the phenotypic variance and five SNPs for the infection rate on chromosomes 4 and 10 explaining together 33 % of the phenotypic variance. The SNPs significantly associated with BYDV resistance can be used in marker assisted selection and will accelerate the breeding process for the development of BYDV resistant maize genotypes. Furthermore, these SNPs were located within genes which were in other organisms described to play a role in general resistance mechanisms. This suggests that these genes contribute to variation of BYDV resistance in maize. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00122-014-2400-1) contains supplementary material, which is available to authorized users

The Objectivity of Ordinary Life

Metaethics tends to take for granted a bare Democritean world of atoms and the void, and then worry about how the human world that we all know can possibly be related to it or justified in its terms. I draw on Wittgenstein to show how completely upside-down this picture is, and make some moves towards turning it the right way up again. There may be a use for something like the bare-Democritean model in some of the sciences, but the picture has no standing as the basic objective truth about the world; if anything has that standing, it is ordinary life. I conclude with some thoughts about how the notion of bare, “thin” perception of non-evaluative reality feeds a number of philosophical pathologies, such as behaviourism, and show how a “thicker”, more value-laden, understanding of our perceptions of the world can be therapeutic against them

Results from a three year testing project of new strawberry cultivars in Verticillium infested soils and under organic farming conditions

As part of a research project 13 cultivars were planted in 2005 at 11 sites on 9 farms in 5 different Austrian regions. The aim was to find new cultivars tolerant to soil-borne pathogens and leaf/fruit diseases, with high yield, winter hardness and good fruit quality, to serve as alternative to the highly susceptible cultivar ‘Elsanta’, regarding soil-borne diseases. Plant vigour and infestation with Verticillium dahliae and leaf diseases were evaluated in 2005 und 2006 at 7 sites and in 2007 at 3 sites. In addition, following parameters were assessed on 2 organically managed sites in 2006 and 2007: marketable yield, percentage of different categories of unmarketable fruits and incidence of the blossom weevil. In 2006 fruit characteristics and consumer acceptance were studied. ‘Elsanta’ showed the highest infestation with V. dahliae whereas ‘Salsa’, ‘Daroyal’ and ‘Alice’ were most tolerant. ‘Dora’, ‘Eva’, ‘Queen Elisa’ and ‘Daroyal’ recorded significantly higher losses by the blossom weevil than ‘Alice’. ‘Alba’ and ‘Divine’ were the earliest cultivars in ripening time. Highest marketable yield per plant had the late ripening cultivars, particularly ‘Salsa’ and ‘Sonata’. Of all early ripening cultivars tested, ‘Elsanta’ showed the highest productivity, followed by 'Alba', ‘Darselect’, ‘Daroyal’ and ‘Eva’. Regarding fruit firmness, content of ascorbic acid, shelf life and appearance, ‘Alba’, ’Clery’, ‘Eva’ and ‘Queen Elisa’ were most convincing. The best tasting cultivars were ‘Clery’, ‘Daroyal’ and ‘Divine’. Summing up all the results, ‘Alba’, ‘Alice’ and ‘Salsa’ can be recommended for organic production, whereas ‘Clery’, ‘Daroyal’, ‘Darselect’, ‘Elsanta’, ‘Eva’, ‘Queen Elisa’ and ‘Sonata’ are classified as suitable for only a limited extent. ‘Elsanta’, ‘Divine’, ‘Dora’ and ‘Sonata’ are particularly unsuitable for growing in Verticillium infested soils. ‘Divine’, ‘Dora’, and ‘Record’ cannot be recommended for organic production at all

Genome-wide association mapping of iron homeostasis in the maize association population

BACKGROUND: Iron (Fe) deficiency in plants is the result of low Fe soil availability affecting 30% of cultivated soils worldwide. To improve our understanding on Fe-efficiency this study aimed to (i) evaluate the influence of two different Fe regimes on morphological and physiological trait formation, (ii) identify polymorphisms statistically associated with morphological and physiological traits, and (iii) dissect the correlation between morphological and physiological traits using an association mapping population. RESULTS: The fine-mapping analyses on quantitative trait loci (QTL) confidence intervals of the intermated B73 × Mo17 (IBM) population provided a total of 13 and 2 single nucleotide polymorphisms (SNPs) under limited and adequate Fe regimes, respectively, which were significantly (FDR = 0.05) associated with cytochrome P450 94A1, invertase beta-fructofuranosidase insoluble isoenzyme 6, and a low-temperature-induced 65 kDa protein. The genome-wide association (GWA) analyses under limited and adequate Fe regimes provided in total 18 and 17 significant SNPs, respectively. CONCLUSIONS: Significantly associated SNPs on a genome-wide level under both Fe regimes for the traits leaf necrosis (NEC), root weight (RW), shoot dry weight (SDW), water (H (2)O), and SPAD value of leaf 3 (SP3) were located in genes or recognition sites of transcriptional regulators, which indicates a direct impact on the phenotype. SNPs which were significantly associated on a genome-wide level under both Fe regimes with the traits NEC, RW, SDW, H (2)O, and SP3 might be attractive targets for marker assisted selection as well as interesting objects for future functional analyses. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12863-014-0153-0) contains supplementary material, which is available to authorized users

Genome-wide association mapping of flowering time and northern corn leaf blight (Setosphaeria turcica) resistance in a vast commercial maize germplasm set

BACKGROUND: Setosphaeria turcica is a fungal pathogen that causes northern corn leaf blight (NCLB) which is a serious foliar disease in maize. In order to unravel the genetic architecture of the resistance against this disease, a vast association mapping panel comprising 1487 European maize inbred lines was used to (i) identify chromosomal regions affecting flowering time (FT) and northern corn leaf blight (NCLB) resistance, (ii) examine the epistatic interactions of the identified chromosomal regions with the genetic background on an individual molecular marker basis, and (iii) dissect the correlation between NCLB resistance and FT. RESULTS: The single marker analyses performed for 8 244 single nucleotide polymorphism (SNP) markers revealed seven, four, and four SNP markers significantly (α=0.05, amplicon wise Bonferroni correction) associated with FT, NCLB, and NCLB resistance corrected for FT, respectively. These markers explained individually between 0.36 and 14.29% of the genetic variance of the corresponding trait. CONCLUSIONS: The very well interpretable pattern of SNP associations observed for FT suggested that data from applied plant breeding programs can be used to dissect polygenic traits. This in turn indicates that the associations identified for NCLB resistance might be successfully used in marker-assisted selection programs. Furthermore, the associated genes are also of interest for further research concerning the mechanism of resistance to NCLB and plant diseases in general, because some of the associated genes have not been mentioned in this context so far

Empirical competence-testing: A psychometric examination of the German version of the Emotional Competence Inventory

The “Emotional Competence Inventory“ (ECI 2.0) by Goleman and Boyatzis assesses emotional intelligence (EI) in organizational context by means of 72 items in 4 clusters (self-awareness, self- management, social awareness, social skills) which at large consist of 18 competencies. Our study examines the psychometric properties of the first German translation of this instrument in two different surveys (N = 236). If all items are included in reliability analysis the ECI is reliable (Cronbach’s Alpha = .90), whereas the reliability of the four sub dimensions is much smaller (Alpha = .62 - .81). For 43 items the corrected item-total correlation with its own scale is higher than correlations with the other three clusters. Convergent validity was examined by using another EI instrument (Wong & Law, 2002). We found a significant correlation between the two instruments (r = .41). The German version of the ECI seems to be quite useful, although the high reliability is achieved by a large number of items. Possibilities of improvement are discussed

Emotional Intelligence and its consequences for occupational and life satisfaction - Emotional Intelligence in the context of irrational beliefs

According to Albert Ellis' theory of Rational Emotive Behavior Therapy irrational beliefs (IB) lead to maladaptive emotions. A central component of irrationality is the denial of one's own possibilities to control important aspects of life. A specific IB is that one cannot control and thus cannot avoid certain emotion states. Emotion research considers regulative emotion control a pivotal component of the concept of emotional intelligence (EI). A negative association between IB and EI can thus be theoretically derived from both concepts. Furthermore both should be related to life satisfaction. We examined the relationship between IB and EI using standardized questionnaire instruments and the predictive value of both concepts regarding life satisfaction. We found a significant negative correlation between both conceptions (r = -.21). Life satisfaction and occupational satisfaction are better predicted by IB. R² increases from .04 to .12 when both concepts are incorporated in regression analysis

Entrainment of randomly coupled oscillator networks by a pacemaker

Entrainment by a pacemaker, representing an element with a higher frequency, is numerically investigated for several classes of random networks which consist of identical phase oscillators. We find that the entrainment frequency window of a network decreases exponentially with its depth, defined as the mean forward distance of the elements from the pacemaker. Effectively, only shallow networks can thus exhibit frequency-locking to the pacemaker. The exponential dependence is also derived analytically as an approximation for large random asymmetric networks.Comment: 4 pages, 3 figures, revtex 4, submitted to Phys. Rev. Let

First steps to understand heat tolerance of temperate maize at adult stage: identification of QTL across multiple environments with connected segregating populations

KEY MESSAGE: Dents were more heat tolerant than Flints. QTL for heat tolerance with respect to grain yield at field conditions were identified considering multiple populations and environments. ABSTRACT: High temperatures have the potential to cause severe damages to maize production. This study aims to elucidate the genetic mechanisms of heat tolerance under field conditions in maize and the genome regions contributing to natural variation. In our study, heat tolerance was assessed on a multi-environment level under non-controlled field conditions for a set of connected intra- and interpool Dent and Flint populations. Our findings indicate that Dent are more heat tolerant during adult stage than Flint genotypes. We identified 11 quantitative trait loci (QTL) including 2 loci for heat tolerance with respect to grain yield. Furthermore, we identified six heat-tolerance and 112 heat-responsive candidate genes colocating with the previously mentioned QTL. To investigate their contribution to the response to heat stress and heat tolerance, differential expression and sequence variation of the identified candidate genes should be subjected to further research. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00122-016-2674-6) contains supplementary material, which is available to authorized users