High-Spatial-Resolution K-Band Imaging of Select K2 Campaign Fields

NASA's K2 mission began observing fields along the ecliptic plane in 2014. Each observing campaign lasts approximately 80 days, during which high-precision optical photometry of select astrophysical targets is collected by the Kepler spacecraft. Due to the 4 arcsec pixel scale of the Kepler photometer, significant blending between the observed targets can occur (especially in dense fields close to the Galactic plane). We undertook a program to use the Wide Field Camera (WFCAM) on the 3.8 m United Kingdom InfraRed Telescope (UKIRT) to collect high-spatial-resolution near-infrared images of targets in select K2 campaign fields, which we report here. These 0.4 arcsec resolution K-band images offer the opportunity to perform a variety of science, including vetting exoplanet candidates by identifying nearby stars blended with the target star and estimating the size, color, and type of galaxies observed by K2.Comment: 2 pages, Published by Research Notes of the American Astronomical Societ

Alternative translation initiation in rat brain yields K2P2.1 potassium channels permeable to sodium.

K(2P) channels mediate potassium background currents essential to central nervous system function, controlling excitability by stabilizing membrane potential below firing threshold and expediting repolarization. Here, we show that alternative translation initiation (ATI) regulates function of K(2P)2.1 (TREK-1) via an unexpected strategy. Full-length K(2P)2.1 and an isoform lacking the first 56 residues of the intracellular N terminus (K(2P)2.1Delta1-56) are produced differentially in a regional and developmental manner in the rat central nervous system, the latter passing sodium under physiological conditions leading to membrane depolarization. Control of ion selectivity via ATI is proposed to be a natural, epigenetic mechanism for spatial and temporal regulation of neuronal excitability

Microarray analysis of RNA extracted from formalin-fixed, paraffin-embedded and matched fresh-frozen ovarian adenocarcinomas

<p>Abstract</p> <p>Background</p> <p>Gene expression profiling of formalin-fixed, paraffin-embedded (FFPE) samples represents a valuable approach for advancing oncology diagnostics and enhancing retrospective clinical studies; however, at present, this methodology still requires optimization and thus has not been extensively used. Here, we utilized thorough quality control methods to assess RNA extracted from FFPE samples and then compared it to RNA extracted from matched fresh-frozen (FF) counterparts. We preformed genome-wide expression profiling of FF and FFPE ovarian serous adenocarcinoma sample pairs and compared their gene signatures to normal ovary samples.</p> <p>Methods</p> <p>RNA from FFPE samples was extracted using two different methods, Ambion and Agencourt, and its quality was determined by profiling starting total RNA on Bioanalyzer and by amplifying increasing size fragments of <it>beta actin </it>(<it>ACTB</it>) and <it>claudin 3 </it>(<it>CLDN3</it>) by reverse-transcriptase polymerase chain reaction. Five matched FF and FFPE ovarian serous adenocarcinoma samples, as well as a set of normal ovary samples, were profiled using whole genome Agilent microarrays. Reproducibility of the FF and FFPE replicates was measured using Pearson correlation, whereas comparison between the FF and FFPE samples was done using a Z-score analysis.</p> <p>Results</p> <p>Data analysis showed high reproducibility of expression within each FF and FFPE method, whereas matched FF and FFPE pairs demonstrated lower similarity, emphasizing an inherent difference between the two sample types. Z-score analysis of matched FF and FFPE samples revealed good concordance of top 100 differentially expressed genes with the highest correlation of 0.84. Genes characteristic of ovarian serous adenocarcinoma, including a well known marker <it>CLDN3</it>, as well as potentially some novel markers, were identified by comparing gene expression profiles of ovarian adenocarcinoma to those of normal ovary.</p> <p>Conclusion</p> <p>Conclusively, we showed that systematic assessment of FFPE samples at the RNA level is essential for obtaining good quality gene expression microarray data. We also demonstrated that profiling of not only FF but also of FFPE samples can be successfully used to identify differentially expressed genes characteristic of ovarian carcinoma.</p

Deep-sea sediment records of the Laschamp geomagnetic field excursion (∼41,000 calendar years before present)

Author Posting. © American Geophysical Union, 2005. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 110 (2005): B04101, doi:10.1029/2003JB002943.We have recovered two new high-resolution paleomagnetic records of the Laschamp Excursion (∼41,000 calendar years B.P.) from deep-sea sediments of the western North Atlantic Ocean. The records document that the Laschamp Excursion was characterized locally by (1) declination changes of ±120°, (2) inclination changes of more than 140°, (3) ∼1200-year oscillations in both inclination and declination, (4) near 90° out-of-phase relationships between inclinations and declinations that produced two clockwise loops in directions and virtual geomagnetic poles (VGPs) followed by a counterclockwise loop, (5) excursional VGPs during both intervals of clockwise looping, (6) magnetic field intensities less than 10% of normal that persisted for almost 2000 years, (7) marked similarity in excursional directions over ∼5000 km spatial scale length, and (8) secular variation rates comparable to historic field behavior but persisting in sign for hundreds of years. All of these features, with the exception of anomalously large directional amplitude, are consistent with normal magnetic field secular variation. Comparison of our Laschamp Excursion paleomagnetic records with other late Quaternary excursion records suggests that there is a group of excursions, which we term class I, which have strikingly similar patterns of field behavior and likely share a common cause as part of the overall core dynamo process. Three general models of secular variation are described that can qualitatively produce class I excursions. On the basis of these observations we conclude that class I excursions, epitomized by the Laschamp Excursion, are more closely related to normal secular variation and are not necessarily a prelude to magnetic field reversal

A common cardiac sodium channel variant associated with sudden infant death in African Americans, SCN5A S1103Y.

Thousands die each year from sudden infant death syndrome (SIDS). Neither the cause nor basis for varied prevalence in different populations is understood. While 2 cases have been associated with mutations in type Valpha, cardiac voltage-gated sodium channels (SCN5A), the "Back to Sleep" campaign has decreased SIDS prevalence, consistent with a role for environmental influences in disease pathogenesis. Here we studied SCN5A in African Americans. Three of 133 SIDS cases were homozygous for the variant S1103Y. Among controls, 120 of 1,056 were carriers of the heterozygous genotype, which was previously associated with increased risk for arrhythmia in adults. This suggests that infants with 2 copies of S1103Y have a 24-fold increased risk for SIDS. Variant Y1103 channels were found to operate normally under baseline conditions in vitro. As risk factors for SIDS include apnea and respiratory acidosis, Y1103 and wild-type channels were subjected to lowered intracellular pH. Only Y1103 channels gained abnormal function, demonstrating late reopenings suppressible by the drug mexiletine. The variant appeared to confer susceptibility to acidosis-induced arrhythmia, a gene-environment interaction. Overall, homozygous and rare heterozygous SCN5A missense variants were found in approximately 5% of cases. If our findings are replicated, prospective genetic testing of SIDS cases and screening with counseling for at-risk families warrant consideration

Identifying Advantages and Disadvantages of Variable Rate Irrigation – An Updated Review

Variable rate irrigation (VRI) sprinklers on mechanical move irrigation systems (center pivot or lateral move) have been commercially available since 2004. Although the number of VRI, zone or individual sprinkler, systems adopted to date is lower than expected there is a continued interest to harness this technology, especially when climate variability, regulatory nutrient management, water conservation policies, and declining water for agriculture compound the challenges involved for irrigated crop production. This article reviews the potential advantages and potential disadvantages of VRI technology for moving sprinklers, provides updated examples on such aspects, suggests a protocol for designing and implementing VRI technology and reports on the recent advancements. The advantages of VRI technology are demonstrated in the areas of agronomic improvement, greater economic returns, environmental protection and risk management, while the main drawbacks to VRI technology include the complexity to successfully implement the technology and the lack of evidence that it assures better performance in net profit or water savings. Although advances have been made in VRI technologies, its penetration into the market will continue to depend on tangible and perceived benefits by producers

First Spitzer Space Telescope Observations of Magnetic Cataclysmic Variables: Evidence for Excess Emission at 3--8 microns

We present the first observations of magnetic cataclysmic variables with the Spitzer Space Telescope. We used the Infrared Array Camera to obtain photometry of the polars EF Eri, GG Leo, V347 Pav, and RX J0154.0-5947 at 3.6, 4.5, 5.8, and 8.0 $\mu$m. In all of our targets, we detect excess mid-infrared emission over that expected from the component stars alone. We explore the origin of this IR excess by examining bremsstrahlung, cyclotron emission, circumbinary dust, and L/T brown dwarf secondary stars. Bremsstrahlung and cyclotron emission appear unlikely to be significant contributors to the observed fluxes. At present, the most likely candidate for the excess emission is dust that is probably located in a circumbinary disk with an inner temperature near 800 K. However, a simple dust disk plus any reasonable low mass or brown dwarf-like secondary star is unable to fully explain the observed flux densities in the 3--8 $\mu$m region.Comment: Accepted to ApJ Letter